Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KZC entry

There are 3 chains in PDB entry 9KZC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 233	ASN 718
B	ILE 222	VAL 551
D	LYS 41	CYS 221

There are 15 helices in PDB entry 9KZC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	248	255	Right-handed alpha
Helix 2	AA2	A	258	281	Right-handed alpha
Helix 3	AA3	A	304	319	Right-handed alpha
Helix 4	AA4	A	362	378	Right-handed alpha
Helix 5	AA5	A	383	390	Right-handed alpha
Helix 6	AA6	A	415	428	Right-handed alpha
Helix 7	AA7	A	431	436	Right-handed 310
Helix 8	AA8	A	462	467	Right-handed alpha
Helix 9	AA9	A	549	558	Right-handed alpha
Helix 10	AB1	A	566	574	Right-handed alpha
Helix 11	AB2	A	672	675	Right-handed 310
Helix 12	AB3	D	178	180	Right-handed 310
Helix 13	AB4	D	181	191	Right-handed alpha
Helix 14	AB5	D	203	207	Right-handed 310
Helix 15	AB6	D	210	214	Right-handed 310

There are 18 sheets in PDB entry 9KZC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	292	first strand
Strand 2	A	239	247	parallel
Strand 3	A	326	331	parallel
Strand 4	A	355	359	parallel
Strand 5	A	341	343	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	475	first strand
Strand 2	A	478	479	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	495	496	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	504	first strand
Strand 2	A	514	515	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	535	first strand
Strand 2	A	540	543	anti-parallel
Strand 3	A	546	548	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	605	606	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	624	first strand
Strand 2	A	635	637	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	658	first strand
Strand 2	A	661	663	anti-parallel
Strand 3	A	668	670	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	694	first strand
Strand 2	A	700	701	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	232	first strand
Strand 2	B	545	550	anti-parallel
Strand 3	B	533	540	anti-parallel
Strand 4	B	522	530	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	248	254	anti-parallel
Strand 3	B	259	265	anti-parallel
Strand 4	B	272	279	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	290	first strand
Strand 2	B	295	301	anti-parallel
Strand 3	B	307	312	anti-parallel
Strand 4	B	317	323	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	339	first strand
Strand 2	B	344	350	anti-parallel
Strand 3	B	358	362	anti-parallel
Strand 4	B	367	372	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	387	first strand
Strand 2	B	396	403	anti-parallel
Strand 3	B	409	414	anti-parallel
Strand 4	B	419	425	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	440	first strand
Strand 2	B	443	449	anti-parallel
Strand 3	B	452	460	anti-parallel
Strand 4	B	465	474	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	484	first strand
Strand 2	B	487	492	anti-parallel
Strand 3	B	499	505	anti-parallel
Strand 4	B	510	517	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	71	75	parallel
Strand 3	D	95	99	parallel
Strand 4	D	119	122	parallel
Strand 5	D	143	145	parallel
Strand 6	D	167	169	parallel
Strand 7	D	194	195	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	106	first strand
Strand 2	D	126	130	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KZC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZC