Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KZH entry

There are 3 chains in PDB entry 9KZH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ALA 2	GLY 276
M	SER 2	PRO 306
H	ASN 2	VAL 257

There are 40 helices in PDB entry 9KZH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	7	11	Right-handed 310
Helix 2	AA2	L	32	56	Right-handed alpha
Helix 3	AA3	L	61	64	Right-handed 310
Helix 4	AA4	L	71	75	Right-handed 310
Helix 5	AA5	L	80	83	Right-handed 310
Helix 6	AA6	L	84	113	Right-handed alpha
Helix 7	AA7	L	116	134	Right-handed alpha
Helix 8	AA8	L	134	141	Right-handed alpha
Helix 9	AA9	L	142	146	Right-handed 310
Helix 10	AB1	L	152	164	Right-handed alpha
Helix 11	AB2	L	171	200	Right-handed alpha
Helix 12	AB3	L	209	221	Right-handed alpha
Helix 13	AB4	L	226	252	Right-handed alpha
Helix 14	AB5	L	259	264	Right-handed alpha
Helix 15	AB6	L	265	274	Right-handed 310
Helix 16	AB7	M	36	43	Right-handed alpha
Helix 17	AB8	M	53	78	Right-handed alpha
Helix 18	AB9	M	81	88	Right-handed alpha
Helix 19	AC1	M	89	91	Right-handed 310
Helix 20	AC2	M	98	102	Right-handed 310
Helix 21	AC3	M	107	110	Right-handed 310
Helix 22	AC4	M	111	139	Right-handed alpha
Helix 23	AC5	M	143	161	Right-handed alpha
Helix 24	AC6	M	161	168	Right-handed alpha
Helix 25	AC7	M	179	191	Right-handed alpha
Helix 26	AC8	M	194	197	Right-handed 310
Helix 27	AC9	M	198	225	Right-handed alpha
Helix 28	AD1	M	226	229	Right-handed 310
Helix 29	AD2	M	232	238	Right-handed alpha
Helix 30	AD3	M	241	256	Right-handed alpha
Helix 31	AD4	M	263	286	Right-handed alpha
Helix 32	AD5	M	292	300	Right-handed alpha
Helix 33	AD6	H	12	36	Right-handed alpha
Helix 34	AD7	H	106	111	Right-handed alpha
Helix 35	AD8	H	112	116	Right-handed 310
Helix 36	AD9	H	138	140	Right-handed 310
Helix 37	AE1	H	200	202	Right-handed 310
Helix 38	AE2	H	219	223	Right-handed 310
Helix 39	AE3	H	236	249	Right-handed alpha
Helix 40	AE4	H	249	254	Right-handed alpha

There are 11 sheets in PDB entry 9KZH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	27	first strand
Strand 2	L	30	31	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	67	first strand
Strand 2	L	149	150	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	13	14	first strand
Strand 2	H	144	145	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	30	first strand
Strand 2	M	50	51	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	34	35	first strand
Strand 2	M	46	47	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	93	94	first strand
Strand 2	M	176	177	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	10	11	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	69	first strand
Strand 2	H	75	78	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	101	103	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	164	174	anti-parallel
Strand 3	H	179	187	anti-parallel
Strand 4	H	194	198	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	164	174	anti-parallel
Strand 3	H	156	159	anti-parallel
Strand 4	H	212	215	parallel
Strand 5	H	203	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KZH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZH