Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KZJ entry

There are 14 chains in PDB entry 9KZJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	VAL 319
B	ALA 27	VAL 319
C	ALA 27	VAL 319
D	ALA 27	VAL 319
E	ALA 27	VAL 319
F	ALA 27	VAL 319
G	ALA 27	VAL 319
N	ALA 2	LEU 158
H	ALA 2	PRO 153
I	ALA 2	LEU 158
J	ALA 2	LEU 158
K	ALA 2	LEU 158
L	ALA 2	LEU 158
M	ALA 2	LEU 158

There are 53 helices in PDB entry 9KZJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	60	Right-handed alpha
Helix 2	AA2	A	119	129	Right-handed alpha
Helix 3	AA3	A	132	154	Right-handed alpha
Helix 4	AA4	A	189	204	Right-handed alpha
Helix 5	AA5	A	218	223	Right-handed alpha
Helix 6	AA6	A	233	238	Right-handed alpha
Helix 7	AA7	A	251	255	Right-handed 310
Helix 8	AA8	A	309	311	Right-handed 310
Helix 9	AA9	B	55	60	Right-handed alpha
Helix 10	AB1	B	119	129	Right-handed alpha
Helix 11	AB2	B	132	154	Right-handed alpha
Helix 12	AB3	B	163	167	Right-handed 310
Helix 13	AB4	B	187	205	Right-handed alpha
Helix 14	AB5	B	218	223	Right-handed alpha
Helix 15	AB6	B	233	242	Right-handed alpha
Helix 16	AB7	B	252	255	Right-handed 310
Helix 17	AB8	B	309	312	Right-handed 310
Helix 18	AB9	C	55	60	Right-handed alpha
Helix 19	AC1	C	119	129	Right-handed alpha
Helix 20	AC2	C	132	154	Right-handed alpha
Helix 21	AC3	C	185	205	Right-handed alpha
Helix 22	AC4	C	218	222	Right-handed 310
Helix 23	AC5	C	233	242	Right-handed alpha
Helix 24	AC6	D	35	40	Right-handed 310
Helix 25	AC7	D	55	60	Right-handed alpha
Helix 26	AC8	D	119	129	Right-handed alpha
Helix 27	AC9	D	132	154	Right-handed alpha
Helix 28	AD1	D	187	205	Right-handed alpha
Helix 29	AD2	D	218	223	Right-handed alpha
Helix 30	AD3	D	233	242	Right-handed alpha
Helix 31	AD4	D	251	254	Right-handed 310
Helix 32	AD5	E	36	38	Right-handed 310
Helix 33	AD6	E	55	60	Right-handed alpha
Helix 34	AD7	E	119	129	Right-handed alpha
Helix 35	AD8	E	132	154	Right-handed alpha
Helix 36	AD9	E	187	205	Right-handed alpha
Helix 37	AE1	E	218	223	Right-handed alpha
Helix 38	AE2	E	233	242	Right-handed alpha
Helix 39	AE3	E	251	254	Right-handed 310
Helix 40	AE4	F	119	129	Right-handed alpha
Helix 41	AE5	F	132	154	Right-handed alpha
Helix 42	AE6	F	163	167	Right-handed 310
Helix 43	AE7	F	185	205	Right-handed alpha
Helix 44	AE8	F	218	223	Right-handed alpha
Helix 45	AE9	F	233	242	Right-handed alpha
Helix 46	AF1	F	251	254	Right-handed 310
Helix 47	AF2	G	55	60	Right-handed alpha
Helix 48	AF3	G	119	129	Right-handed alpha
Helix 49	AF4	G	132	154	Right-handed alpha
Helix 50	AF5	G	185	204	Right-handed alpha
Helix 51	AF6	G	219	224	Right-handed alpha
Helix 52	AF7	G	233	242	Right-handed alpha
Helix 53	AF8	G	251	254	Right-handed 310

There are 62 sheets in PDB entry 9KZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	81	first strand
Strand 2	A	98	107	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	118	first strand
Strand 2	A	293	302	anti-parallel
Strand 3	A	283	284	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	118	first strand
Strand 2	A	293	302	anti-parallel
Strand 3	A	288	290	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	313	317	parallel
Strand 3	A	263	267	anti-parallel
Strand 4	A	212	215	anti-parallel
Strand 5	A	246	249	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	305	307	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	48	first strand
Strand 2	G	72	78	parallel
Strand 3	G	102	107	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	107	first strand
Strand 2	B	72	81	anti-parallel
Strand 3	C	41	42	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	107	first strand
Strand 2	B	72	81	anti-parallel
Strand 3	C	47	48	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	C	109	118	anti-parallel
Strand 3	C	293	302	anti-parallel
Strand 4	C	283	284	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	284	first strand
Strand 2	B	293	302	anti-parallel
Strand 3	B	109	118	anti-parallel
Strand 4	G	85	86	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	174	first strand
Strand 2	B	314	317	parallel
Strand 3	B	263	267	anti-parallel
Strand 4	B	212	215	anti-parallel
Strand 5	B	246	250	parallel
Strand 6	I	6	7	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	183	184	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	276	first strand
Strand 2	B	305	307	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	107	first strand
Strand 2	C	72	81	anti-parallel
Strand 3	D	42	48	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	D	109	118	anti-parallel
Strand 3	D	293	302	anti-parallel
Strand 4	D	283	284	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	313	317	parallel
Strand 3	C	263	267	anti-parallel
Strand 4	C	212	215	anti-parallel
Strand 5	C	246	250	parallel
Strand 6	N	6	7	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	183	184	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	276	first strand
Strand 2	C	305	307	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	107	first strand
Strand 2	D	72	81	anti-parallel
Strand 3	E	40	42	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	107	first strand
Strand 2	D	72	81	anti-parallel
Strand 3	E	47	48	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	E	109	118	anti-parallel
Strand 3	E	293	302	anti-parallel
Strand 4	E	283	284	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	174	first strand
Strand 2	D	313	317	parallel
Strand 3	D	263	267	anti-parallel
Strand 4	D	212	215	anti-parallel
Strand 5	D	246	249	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	183	184	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	276	first strand
Strand 2	D	305	307	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	107	first strand
Strand 2	E	72	81	anti-parallel
Strand 3	F	41	48	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	F	109	118	anti-parallel
Strand 3	F	293	302	anti-parallel
Strand 4	F	283	284	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	174	first strand
Strand 2	E	313	317	parallel
Strand 3	E	263	267	anti-parallel
Strand 4	E	212	215	anti-parallel
Strand 5	E	246	249	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	180	first strand
Strand 2	E	183	184	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	276	first strand
Strand 2	E	305	307	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	107	first strand
Strand 2	F	72	81	anti-parallel
Strand 3	G	47	48	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	86	first strand
Strand 2	G	109	118	anti-parallel
Strand 3	G	293	302	anti-parallel
Strand 4	G	283	284	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	171	174	first strand
Strand 2	F	313	317	parallel
Strand 3	F	263	267	anti-parallel
Strand 4	F	212	215	anti-parallel
Strand 5	F	246	249	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	180	first strand
Strand 2	F	183	184	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	274	276	first strand
Strand 2	F	305	307	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	81	first strand
Strand 2	G	98	99	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	174	first strand
Strand 2	G	313	317	parallel
Strand 3	G	263	267	anti-parallel
Strand 4	G	212	215	anti-parallel
Strand 5	G	246	249	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	179	180	first strand
Strand 2	G	183	184	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	274	275	first strand
Strand 2	G	306	307	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	27	29	first strand
Strand 2	N	96	105	anti-parallel
Strand 3	N	71	72	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	27	29	first strand
Strand 2	N	96	105	anti-parallel
Strand 3	N	148	155	anti-parallel
Strand 4	N	132	145	anti-parallel
Strand 5	N	117	120	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	32	34	first strand
Strand 2	N	57	61	parallel
Strand 3	N	45	50	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	39	40	first strand
Strand 2	N	85	88	anti-parallel
Strand 3	N	80	82	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	25	first strand
Strand 2	H	85	94	anti-parallel
Strand 3	H	63	65	anti-parallel
Strand 4	H	37	46	anti-parallel
Strand 5	H	49	54	anti-parallel
Strand 6	H	28	30	parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	23	25	first strand
Strand 2	H	85	94	anti-parallel
Strand 3	H	137	143	anti-parallel
Strand 4	H	125	132	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	110	first strand
Strand 2	H	114	117	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	29	first strand
Strand 2	I	96	105	anti-parallel
Strand 3	I	70	72	anti-parallel
Strand 4	I	44	50	anti-parallel
Strand 5	I	57	61	anti-parallel
Strand 6	I	32	34	parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	29	first strand
Strand 2	I	96	105	anti-parallel
Strand 3	I	148	155	anti-parallel
Strand 4	I	132	145	anti-parallel
Strand 5	I	117	120	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	39	40	first strand
Strand 2	I	85	88	anti-parallel
Strand 3	I	80	82	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	29	first strand
Strand 2	J	96	105	anti-parallel
Strand 3	J	71	72	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	29	first strand
Strand 2	J	96	105	anti-parallel
Strand 3	J	148	155	anti-parallel
Strand 4	J	132	145	anti-parallel
Strand 5	J	117	120	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	34	first strand
Strand 2	J	57	61	parallel
Strand 3	J	45	50	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	40	first strand
Strand 2	J	85	88	anti-parallel
Strand 3	J	80	82	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	27	29	first strand
Strand 2	K	96	105	anti-parallel
Strand 3	K	70	72	anti-parallel
Strand 4	K	44	50	anti-parallel
Strand 5	K	57	61	anti-parallel
Strand 6	K	32	34	parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	27	29	first strand
Strand 2	K	96	105	anti-parallel
Strand 3	K	148	155	anti-parallel
Strand 4	K	132	145	anti-parallel
Strand 5	K	117	120	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	40	first strand
Strand 2	K	85	88	anti-parallel
Strand 3	K	80	82	anti-parallel

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There are 5 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	50	first strand
Strand 2	L	57	61	anti-parallel
Strand 3	L	27	34	parallel
Strand 4	L	93	105	anti-parallel
Strand 5	L	71	72	anti-parallel

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There are 6 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	50	first strand
Strand 2	L	57	61	anti-parallel
Strand 3	L	27	34	parallel
Strand 4	L	93	105	anti-parallel
Strand 5	L	148	155	anti-parallel
Strand 6	L	137	145	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	39	40	first strand
Strand 2	L	85	88	anti-parallel
Strand 3	L	80	82	anti-parallel

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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	120	first strand
Strand 2	L	132	133	anti-parallel

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There are 6 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	27	29	first strand
Strand 2	M	96	105	anti-parallel
Strand 3	M	70	72	anti-parallel
Strand 4	M	44	50	anti-parallel
Strand 5	M	57	61	anti-parallel
Strand 6	M	32	34	parallel

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There are 5 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	27	29	first strand
Strand 2	M	96	105	anti-parallel
Strand 3	M	148	155	anti-parallel
Strand 4	M	132	145	anti-parallel
Strand 5	M	117	120	anti-parallel

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There are 3 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	40	first strand
Strand 2	M	85	88	anti-parallel
Strand 3	M	80	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KZJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZJ