Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KZL entry

There are 3 chains in PDB entry 9KZL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 10	GLU 498
B	VAL 10	GLU 498
C	VAL 10	GLU 498

There are 57 helices in PDB entry 9KZL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	19	Right-handed 310
Helix 2	AA2	A	20	36	Right-handed alpha
Helix 3	AA3	A	42	48	Right-handed alpha
Helix 4	AA4	A	73	92	Right-handed alpha
Helix 5	AA5	A	111	116	Right-handed alpha
Helix 6	AA6	A	117	121	Right-handed 310
Helix 7	AA7	A	140	145	Right-handed 310
Helix 8	AA8	A	154	165	Right-handed alpha
Helix 9	AA9	A	167	188	Right-handed alpha
Helix 10	AB1	A	199	203	Right-handed 310
Helix 11	AB2	A	204	228	Right-handed alpha
Helix 12	AB3	A	256	262	Right-handed alpha
Helix 13	AB4	A	264	269	Right-handed alpha
Helix 14	AB5	A	270	274	Right-handed 310
Helix 15	AB6	A	287	299	Right-handed alpha
Helix 16	AB7	A	358	365	Right-handed alpha
Helix 17	AB8	A	368	372	Right-handed 310
Helix 18	AB9	A	447	453	Right-handed alpha
Helix 19	AC1	A	483	488	Right-handed alpha
Helix 20	AC2	B	20	37	Right-handed alpha
Helix 21	AC3	B	42	48	Right-handed alpha
Helix 22	AC4	B	73	92	Right-handed alpha
Helix 23	AC5	B	111	116	Right-handed alpha
Helix 24	AC6	B	117	121	Right-handed 310
Helix 25	AC7	B	140	145	Right-handed 310
Helix 26	AC8	B	154	165	Right-handed alpha
Helix 27	AC9	B	167	188	Right-handed alpha
Helix 28	AD1	B	199	203	Right-handed 310
Helix 29	AD2	B	204	227	Right-handed alpha
Helix 30	AD3	B	239	243	Right-handed 310
Helix 31	AD4	B	256	262	Right-handed alpha
Helix 32	AD5	B	264	269	Right-handed alpha
Helix 33	AD6	B	270	274	Right-handed 310
Helix 34	AD7	B	287	299	Right-handed alpha
Helix 35	AD8	B	358	366	Right-handed alpha
Helix 36	AD9	B	368	372	Right-handed 310
Helix 37	AE1	B	447	454	Right-handed alpha
Helix 38	AE2	B	483	489	Right-handed alpha
Helix 39	AE3	C	15	19	Right-handed 310
Helix 40	AE4	C	20	37	Right-handed alpha
Helix 41	AE5	C	42	48	Right-handed alpha
Helix 42	AE6	C	73	92	Right-handed alpha
Helix 43	AE7	C	111	116	Right-handed alpha
Helix 44	AE8	C	117	121	Right-handed 310
Helix 45	AE9	C	140	145	Right-handed 310
Helix 46	AF1	C	154	165	Right-handed alpha
Helix 47	AF2	C	167	188	Right-handed alpha
Helix 48	AF3	C	199	203	Right-handed 310
Helix 49	AF4	C	204	227	Right-handed alpha
Helix 50	AF5	C	256	262	Right-handed alpha
Helix 51	AF6	C	264	269	Right-handed alpha
Helix 52	AF7	C	270	274	Right-handed 310
Helix 53	AF8	C	287	299	Right-handed alpha
Helix 54	AF9	C	358	366	Right-handed alpha
Helix 55	AG1	C	368	372	Right-handed 310
Helix 56	AG2	C	447	453	Right-handed alpha
Helix 57	AG3	C	483	488	Right-handed alpha

There are 17 sheets in PDB entry 9KZL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	276	278	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	133	134	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	149	first strand
Strand 2	A	152	153	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	303	308	anti-parallel
Strand 3	A	394	398	anti-parallel
Strand 4	A	406	411	anti-parallel
Strand 5	A	428	433	parallel
Strand 6	A	470	471	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	339	first strand
Strand 2	A	317	324	anti-parallel
Strand 3	A	373	380	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	422	first strand
Strand 2	A	492	496	parallel
Strand 3	A	476	480	anti-parallel
Strand 4	A	442	444	anti-parallel
Strand 5	A	463	464	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	276	278	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	133	134	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	152	153	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	303	308	anti-parallel
Strand 3	B	394	398	anti-parallel
Strand 4	B	406	411	anti-parallel
Strand 5	B	428	433	parallel
Strand 6	B	470	471	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	339	first strand
Strand 2	B	317	324	anti-parallel
Strand 3	B	373	380	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	423	first strand
Strand 2	B	492	497	parallel
Strand 3	B	475	480	anti-parallel
Strand 4	B	442	444	anti-parallel
Strand 5	B	463	464	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	276	278	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	152	153	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	303	308	anti-parallel
Strand 3	C	394	398	anti-parallel
Strand 4	C	406	411	anti-parallel
Strand 5	C	428	433	parallel
Strand 6	C	469	471	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	339	first strand
Strand 2	C	317	324	anti-parallel
Strand 3	C	373	380	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	423	first strand
Strand 2	C	492	497	parallel
Strand 3	C	475	480	anti-parallel
Strand 4	C	443	444	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KZL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZL