Analysis of interatomic Contacts of Structural Units in PDB entry:
9KZW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KZW entry

There are 2 chains in PDB entry 9KZW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 424
B
 MET 1VAL 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 9KZW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 32Right-handed alpha
Helix 2
AA2
A
35 63Right-handed alpha
Helix 3
AA3
A
75 106Right-handed alpha
Helix 4
AA4
A
112 134Right-handed alpha
Helix 5
AA5
A
232 272Right-handed alpha
Helix 6
AA6
A
289 298Right-handed alpha
Helix 7
AA7
A
315 344Right-handed alpha
Helix 8
AA8
A
352 363Right-handed alpha
Helix 9
AA9
A
395 411Right-handed alpha
Helix 10
AB1
B
5 32Right-handed alpha
Helix 11
AB2
B
35 63Right-handed alpha
Helix 12
AB3
B
75 106Right-handed alpha
Helix 13
AB4
B
112 134Right-handed alpha
Helix 14
AB5
B
232 272Right-handed alpha
Helix 15
AB6
B
293 298Right-handed alpha
Helix 16
AB7
B
315 344Right-handed alpha
Helix 17
AB8
B
352 363Right-handed alpha
Helix 18
AB9
B
395 411Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9KZW. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 378first strand
Strand 2
A
381 389anti-parallel
Strand 3
A
414 419parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 378first strand
Strand 2
B
381 389anti-parallel
Strand 3
B
414 419parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il