Analysis of interatomic Contacts of Structural Units in PDB entry:
9L05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L05 entry

There are 3 chains in PDB entry 9L05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLU 1	PRO 229
H	GLN 1	GLU 227
A	THR 333	LEU 517

There are 9 helices in PDB entry 9L05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	142	147	Right-handed alpha
Helix 2	AA2	L	202	209	Right-handed alpha
Helix 3	AA3	H	95	99	Right-handed 310
Helix 4	AA4	H	201	205	Right-handed 310
Helix 5	AA5	A	338	343	Right-handed alpha
Helix 6	AA6	A	349	353	Right-handed 310
Helix 7	AA7	A	365	371	Right-handed alpha
Helix 8	AA8	A	383	387	Right-handed 310
Helix 9	AA9	A	406	410	Right-handed 310

There are 14 sheets in PDB entry 9L05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	122	124	parallel
Strand 3	L	101	108	anti-parallel
Strand 4	L	39	44	anti-parallel
Strand 5	L	51	54	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	11	first strand
Strand 2	L	122	124	parallel
Strand 3	L	101	108	anti-parallel
Strand 4	L	115	118	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	24	first strand
Strand 2	L	86	92	anti-parallel
Strand 3	L	76	81	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	135	139	first strand
Strand 2	L	153	160	anti-parallel
Strand 3	L	193	199	anti-parallel
Strand 4	L	180	182	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	135	139	first strand
Strand 2	L	153	160	anti-parallel
Strand 3	L	193	199	anti-parallel
Strand 4	L	186	187	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	175	176	first strand
Strand 2	L	166	170	anti-parallel
Strand 3	L	212	218	anti-parallel
Strand 4	L	221	227	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	86	91	anti-parallel
Strand 4	H	76	81	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	100	108	anti-parallel
Strand 4	H	37	44	anti-parallel
Strand 5	H	51	56	anti-parallel
Strand 6	H	65	67	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	100	108	anti-parallel
Strand 4	H	115	117	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	139	first strand
Strand 2	H	151	160	anti-parallel
Strand 3	H	191	199	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	169	first strand
Strand 2	H	210	213	anti-parallel
Strand 3	H	222	225	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	394	402	anti-parallel
Strand 3	A	508	516	anti-parallel
Strand 4	A	430	437	anti-parallel
Strand 5	A	378	379	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L05

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L05