Analysis of interatomic Contacts of Structural Units in PDB entry:
9L06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L06 entry

There are 11 chains in PDB entry 9L06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ARG 134
B	ALA 15	GLY 101
C	ALA 12	LYS 118
D	SER 29	SER 121
E	ARG 40	ARG 134
F	ARG 17	GLY 102
G	ALA 12	LYS 118
H	SER 29	SER 121
I	T 1	T 147
J	A 1	A 147
K	GLY 1474	ASP 2255

There are 68 helices in PDB entry 9L06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	57	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	46	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	C	112	116	Right-handed 310
Helix 15	AB6	D	34	46	Right-handed alpha
Helix 16	AB7	D	52	81	Right-handed alpha
Helix 17	AB8	D	87	99	Right-handed alpha
Helix 18	AB9	D	100	121	Right-handed alpha
Helix 19	AC1	E	44	57	Right-handed alpha
Helix 20	AC2	E	63	77	Right-handed alpha
Helix 21	AC3	E	85	114	Right-handed alpha
Helix 22	AC4	E	120	131	Right-handed alpha
Helix 23	AC5	F	24	29	Right-handed 310
Helix 24	AC6	F	30	41	Right-handed alpha
Helix 25	AC7	F	49	76	Right-handed alpha
Helix 26	AC8	F	82	93	Right-handed alpha
Helix 27	AC9	G	16	22	Right-handed alpha
Helix 28	AD1	G	26	37	Right-handed alpha
Helix 29	AD2	G	46	73	Right-handed alpha
Helix 30	AD3	G	79	89	Right-handed alpha
Helix 31	AD4	G	90	97	Right-handed alpha
Helix 32	AD5	G	112	116	Right-handed 310
Helix 33	AD6	H	34	46	Right-handed alpha
Helix 34	AD7	H	52	81	Right-handed alpha
Helix 35	AD8	H	87	99	Right-handed alpha
Helix 36	AD9	H	101	121	Right-handed alpha
Helix 37	AE1	K	1490	1511	Right-handed alpha
Helix 38	AE2	K	1553	1560	Right-handed alpha
Helix 39	AE3	K	1561	1576	Right-handed alpha
Helix 40	AE4	K	1578	1583	Right-handed alpha
Helix 41	AE5	K	1601	1613	Right-handed alpha
Helix 42	AE6	K	1630	1642	Right-handed alpha
Helix 43	AE7	K	1646	1650	Right-handed 310
Helix 44	AE8	K	1661	1676	Right-handed alpha
Helix 45	AE9	K	1683	1692	Right-handed alpha
Helix 46	AF1	K	1697	1709	Right-handed alpha
Helix 47	AF2	K	1721	1724	Right-handed 310
Helix 48	AF3	K	1729	1737	Right-handed alpha
Helix 49	AF4	K	1755	1766	Right-handed alpha
Helix 50	AF5	K	1772	1780	Right-handed alpha
Helix 51	AF6	K	1780	1789	Right-handed alpha
Helix 52	AF7	K	1793	1810	Right-handed alpha
Helix 53	AF8	K	1820	1825	Right-handed alpha
Helix 54	AF9	K	1840	1854	Right-handed alpha
Helix 55	AG1	K	1871	1883	Right-handed alpha
Helix 56	AG2	K	1887	1898	Right-handed alpha
Helix 57	AG3	K	1966	1970	Right-handed 310
Helix 58	AG4	K	1972	1976	Right-handed 310
Helix 59	AG5	K	2000	2005	Right-handed 310
Helix 60	AG6	K	2007	2013	Right-handed 310
Helix 61	AG7	K	2017	2034	Right-handed alpha
Helix 62	AG8	K	2044	2063	Right-handed alpha
Helix 63	AG9	K	2091	2104	Right-handed alpha
Helix 64	AH1	K	2117	2121	Right-handed alpha
Helix 65	AH2	K	2140	2149	Right-handed alpha
Helix 66	AH3	K	2170	2190	Right-handed alpha
Helix 67	AH4	K	2234	2244	Right-handed alpha
Helix 68	AH5	K	2245	2248	Right-handed 310

There are 14 sheets in PDB entry 9L06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1538	1541	first strand
Strand 2	K	1548	1551	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1716	1719	first strand
Strand 2	K	1743	1746	parallel
Strand 3	K	1590	1594	parallel
Strand 4	K	1815	1818	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1623	1626	first strand
Strand 2	K	1678	1682	parallel
Strand 3	K	1653	1655	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1833	1837	first strand
Strand 2	K	2161	2167	parallel
Strand 3	K	2131	2134	parallel
Strand 4	K	2037	2041	parallel
Strand 5	K	2112	2116	parallel
Strand 6	K	2084	2086	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L06

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L06