Analysis of interatomic Contacts of Structural Units in PDB entry:
9L07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L07 entry

There are 3 chains in PDB entry 9L07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 333LYS 528
L
 GLU 1GLU 231
H
 GLN 1ARG 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9L07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
337 343Right-handed alpha
Helix 2
AA2
A
364 371Right-handed 310
Helix 3
AA3
A
383 387Right-handed 310
Helix 4
AA4
A
405 410Right-handed 310
Helix 5
AA5
A
416 422Right-handed alpha
Helix 6
AA6
L
82 84Right-handed 310
Helix 7
AA7
L
95 99Right-handed 310
Helix 8
AA8
L
142 148Right-handed alpha
Helix 9
AA9
L
202 208Right-handed alpha
Helix 10
AB1
H
69 72Right-handed 310
Helix 11
AB2
H
95 99Right-handed 310
Helix 12
AB3
H
168 173Right-handed 310
Helix 13
AB4
H
202 204Right-handed 310
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There are 16 sheets in PDB entry 9L07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
395 403anti-parallel
Strand 3
A
507 514anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 380anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
524 525anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
18 25anti-parallel
Strand 3
L
86 92anti-parallel
Strand 4
L
76 81anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
122 126parallel
Strand 3
L
101 107anti-parallel
Strand 4
L
40 44anti-parallel
Strand 5
L
51 54anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
122 126parallel
Strand 3
L
101 107anti-parallel
Strand 4
L
116 118anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
137 139first strand
Strand 2
L
151 160anti-parallel
Strand 3
L
193 201anti-parallel
Strand 4
L
180 182anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
137 139first strand
Strand 2
L
151 160anti-parallel
Strand 3
L
193 201anti-parallel
Strand 4
L
186 187anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
166 170first strand
Strand 2
L
213 217anti-parallel
Strand 3
L
222 223anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
19 26anti-parallel
Strand 3
H
86 91anti-parallel
Strand 4
H
76 81anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
65 67first strand
Strand 2
H
51 56anti-parallel
Strand 3
H
39 44anti-parallel
Strand 4
H
100 108anti-parallel
Strand 5
H
113 115anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
65 67first strand
Strand 2
H
51 56anti-parallel
Strand 3
H
39 44anti-parallel
Strand 4
H
100 108anti-parallel
Strand 5
H
122 124anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 138first strand
Strand 2
H
150 160anti-parallel
Strand 3
H
191 200anti-parallel
Strand 4
H
178 180anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 138first strand
Strand 2
H
150 160anti-parallel
Strand 3
H
191 200anti-parallel
Strand 4
H
184 185anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
211 215first strand
Strand 2
H
220 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il