Analysis of interatomic Contacts of Structural Units in PDB entry:
9L0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L0B entry

There are 2 chains in PDB entry 9L0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13ARG 436
B
 PHE 55GLN 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9L0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 40Right-handed alpha
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
54 59Right-handed alpha
Helix 4
AA4
A
59 81Right-handed alpha
Helix 5
AA5
A
85 105Right-handed alpha
Helix 6
AA6
A
111 116Right-handed alpha
Helix 7
AA7
A
118 139Right-handed alpha
Helix 8
AA8
A
142 173Right-handed alpha
Helix 9
AA9
A
174 194Right-handed alpha
Helix 10
AB1
A
238 243Right-handed alpha
Helix 11
AB2
A
244 258Right-handed alpha
Helix 12
AB3
A
262 276Right-handed alpha
Helix 13
AB4
A
278 305Right-handed alpha
Helix 14
AB5
A
309 311Right-handed 310
Helix 15
AB6
A
312 331Right-handed alpha
Helix 16
AB7
A
336 353Right-handed alpha
Helix 17
AB8
A
354 367Right-handed alpha
Helix 18
AB9
A
370 400Right-handed alpha
Helix 19
AC1
A
403 436Right-handed alpha
Helix 20
AC2
B
133 137Right-handed 310
Helix 21
AC3
B
205 209Right-handed 310
Helix 22
AC4
B
228 232Right-handed 310
Helix 23
AC5
B
257 286Right-handed alpha
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There are 4 sheets in PDB entry 9L0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 64first strand
Strand 2
B
82 91parallel
Strand 3
B
122 131anti-parallel
Strand 4
B
114 119anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 77first strand
Strand 2
B
149 157parallel
Strand 3
B
139 145anti-parallel
Strand 4
B
100 105anti-parallel
Strand 5
B
108 109anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
244 255parallel
Strand 3
B
234 241anti-parallel
Strand 4
B
190 195anti-parallel
Strand 5
B
200 202anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 180first strand
Strand 2
B
220 225anti-parallel
Strand 3
B
211 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il