Analysis of interatomic Contacts of Structural Units in PDB entry:
9L0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L0D entry

There are 4 chains in PDB entry 9L0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 236	TYR 652
B	GLU 17	ASP 482
C	MET 1	PHE 657
D	LEU 8	GLU 185

There are 62 helices in PDB entry 9L0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	237	247	Right-handed alpha
Helix 2	AA2	A	273	275	Right-handed 310
Helix 3	AA3	A	276	290	Right-handed alpha
Helix 4	AA4	A	325	344	Right-handed alpha
Helix 5	AA5	A	345	356	Right-handed alpha
Helix 6	AA6	A	369	374	Right-handed alpha
Helix 7	AA7	A	374	382	Right-handed alpha
Helix 8	AA8	A	383	388	Right-handed alpha
Helix 9	AA9	A	398	410	Right-handed alpha
Helix 10	AB1	A	438	452	Right-handed alpha
Helix 11	AB2	A	453	457	Right-handed 310
Helix 12	AB3	A	499	517	Right-handed alpha
Helix 13	AB4	A	518	529	Right-handed alpha
Helix 14	AB5	A	534	538	Right-handed 310
Helix 15	AB6	A	566	584	Right-handed alpha
Helix 16	AB7	A	622	645	Right-handed alpha
Helix 17	AB8	B	40	43	Right-handed 310
Helix 18	AB9	B	54	73	Right-handed alpha
Helix 19	AC1	B	130	150	Right-handed alpha
Helix 20	AC2	B	151	176	Right-handed alpha
Helix 21	AC3	B	177	179	Right-handed 310
Helix 22	AC4	B	180	184	Right-handed 310
Helix 23	AC5	B	185	191	Right-handed alpha
Helix 24	AC6	B	199	217	Right-handed alpha
Helix 25	AC7	B	238	251	Right-handed alpha
Helix 26	AC8	B	252	258	Right-handed alpha
Helix 27	AC9	B	258	263	Right-handed alpha
Helix 28	AD1	B	268	272	Right-handed 310
Helix 29	AD2	B	335	368	Right-handed alpha
Helix 30	AD3	B	406	421	Right-handed alpha
Helix 31	AD4	B	459	475	Right-handed alpha
Helix 32	AD5	C	2	6	Right-handed 310
Helix 33	AD6	C	74	76	Right-handed 310
Helix 34	AD7	C	209	211	Right-handed 310
Helix 35	AD8	C	321	326	Right-handed 310
Helix 36	AD9	C	365	370	Right-handed alpha
Helix 37	AE1	C	372	381	Right-handed alpha
Helix 38	AE2	C	387	397	Right-handed alpha
Helix 39	AE3	C	405	436	Right-handed alpha
Helix 40	AE4	C	456	463	Right-handed alpha
Helix 41	AE5	C	464	471	Right-handed alpha
Helix 42	AE6	C	475	493	Right-handed alpha
Helix 43	AE7	C	498	512	Right-handed alpha
Helix 44	AE8	C	515	524	Right-handed alpha
Helix 45	AE9	C	530	540	Right-handed alpha
Helix 46	AF1	C	541	543	Right-handed 310
Helix 47	AF2	C	544	545	Right-handed 310
Helix 48	AF3	C	546	559	Right-handed alpha
Helix 49	AF4	C	561	572	Right-handed alpha
Helix 50	AF5	C	574	586	Right-handed alpha
Helix 51	AF6	C	587	590	Right-handed 310
Helix 52	AF7	C	592	599	Right-handed alpha
Helix 53	AF8	C	606	611	Right-handed alpha
Helix 54	AF9	C	612	625	Right-handed alpha
Helix 55	AG1	C	630	634	Right-handed 310
Helix 56	AG2	D	67	72	Right-handed 310
Helix 57	AG3	D	73	78	Right-handed alpha
Helix 58	AG4	D	93	98	Right-handed alpha
Helix 59	AG5	D	98	110	Right-handed alpha
Helix 60	AG6	D	114	118	Right-handed 310
Helix 61	AG7	D	135	146	Right-handed alpha
Helix 62	AG8	D	161	184	Right-handed alpha

There are 17 sheets in PDB entry 9L0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	267	first strand
Strand 2	A	253	259	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	305	311	anti-parallel
Strand 5	A	296	300	anti-parallel
Strand 6	B	83	86	anti-parallel
Strand 7	B	90	97	anti-parallel
Strand 8	B	100	106	anti-parallel
Strand 9	B	24	30	anti-parallel
Strand 10	B	45	49	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	554	556	parallel
Strand 3	A	544	549	anti-parallel
Strand 4	A	611	616	anti-parallel
Strand 5	A	603	607	anti-parallel
Strand 6	A	591	596	anti-parallel
Strand 7	B	427	433	anti-parallel
Strand 8	B	438	444	anti-parallel
Strand 9	B	447	453	anti-parallel
Strand 10	B	376	382	anti-parallel
Strand 11	B	388	390	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	464	first strand
Strand 2	A	475	481	anti-parallel
Strand 3	A	489	493	anti-parallel
Strand 4	A	417	421	anti-parallel
Strand 5	A	426	431	anti-parallel
Strand 6	A	650	651	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	110	113	anti-parallel
Strand 3	B	121	124	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	234	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	322	329	anti-parallel
Strand 4	B	310	318	anti-parallel
Strand 5	B	281	282	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	234	first strand
Strand 2	B	220	227	anti-parallel
Strand 3	B	322	329	anti-parallel
Strand 4	B	310	318	anti-parallel
Strand 5	B	300	303	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	402	403	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	360	361	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	355	358	anti-parallel
Strand 3	C	347	350	anti-parallel
Strand 4	C	340	343	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	29	first strand
Strand 2	C	34	39	anti-parallel
Strand 3	C	43	49	anti-parallel
Strand 4	C	57	62	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	78	82	anti-parallel
Strand 3	C	87	92	anti-parallel
Strand 4	C	102	105	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	117	first strand
Strand 2	C	123	128	anti-parallel
Strand 3	C	131	138	anti-parallel
Strand 4	C	143	150	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	165	169	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	186	189	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	165	169	anti-parallel
Strand 3	C	176	183	anti-parallel
Strand 4	C	193	194	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	221	228	anti-parallel
Strand 3	C	240	245	anti-parallel
Strand 4	C	253	259	anti-parallel
Strand 5	C	301	303	parallel
Strand 6	C	295	296	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	271	first strand
Strand 2	C	274	279	anti-parallel
Strand 3	C	284	288	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	52	first strand
Strand 2	D	55	64	anti-parallel
Strand 3	D	9	14	parallel
Strand 4	D	83	89	parallel
Strand 5	D	120	125	parallel
Strand 6	D	151	153	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L0D