Analysis of interatomic Contacts of Structural Units in PDB entry:
9L0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L0I entry

There are 4 chains in PDB entry 9L0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2ARG 253
B
 PHE 2ARG 253
C
 PHE 2ARG 253
D
 PHE 2ARG 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9L0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 5Right-handed 310
Helix 2
AA2
A
6 31Right-handed alpha
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
55 81Right-handed alpha
Helix 5
AA5
A
92 124Right-handed alpha
Helix 6
AA6
A
129 135Right-handed alpha
Helix 7
AA7
A
137 141Right-handed 310
Helix 8
AA8
A
142 145Right-handed 310
Helix 9
AA9
A
156 163Right-handed alpha
Helix 10
AB1
A
169 190Right-handed alpha
Helix 11
AB2
A
192 196Right-handed 310
Helix 12
AB3
A
197 220Right-handed alpha
Helix 13
AB4
A
224 246Right-handed alpha
Helix 14
AB5
B
3 5Right-handed 310
Helix 15
AB6
B
6 31Right-handed alpha
Helix 16
AB7
B
42 46Right-handed 310
Helix 17
AB8
B
55 81Right-handed alpha
Helix 18
AB9
B
92 124Right-handed alpha
Helix 19
AC1
B
129 135Right-handed alpha
Helix 20
AC2
B
137 141Right-handed 310
Helix 21
AC3
B
142 145Right-handed 310
Helix 22
AC4
B
156 163Right-handed alpha
Helix 23
AC5
B
169 190Right-handed alpha
Helix 24
AC6
B
192 196Right-handed 310
Helix 25
AC7
B
197 220Right-handed alpha
Helix 26
AC8
B
224 246Right-handed alpha
Helix 27
AC9
C
3 5Right-handed 310
Helix 28
AD1
C
6 31Right-handed alpha
Helix 29
AD2
C
42 46Right-handed 310
Helix 30
AD3
C
55 81Right-handed alpha
Helix 31
AD4
C
92 124Right-handed alpha
Helix 32
AD5
C
129 135Right-handed alpha
Helix 33
AD6
C
137 141Right-handed 310
Helix 34
AD7
C
142 145Right-handed 310
Helix 35
AD8
C
156 163Right-handed alpha
Helix 36
AD9
C
169 190Right-handed alpha
Helix 37
AE1
C
192 196Right-handed 310
Helix 38
AE2
C
197 220Right-handed alpha
Helix 39
AE3
C
224 246Right-handed alpha
Helix 40
AE4
D
3 5Right-handed 310
Helix 41
AE5
D
6 31Right-handed alpha
Helix 42
AE6
D
42 46Right-handed 310
Helix 43
AE7
D
55 81Right-handed alpha
Helix 44
AE8
D
92 124Right-handed alpha
Helix 45
AE9
D
129 135Right-handed alpha
Helix 46
AF1
D
137 141Right-handed 310
Helix 47
AF2
D
142 145Right-handed 310
Helix 48
AF3
D
156 163Right-handed alpha
Helix 49
AF4
D
169 190Right-handed alpha
Helix 50
AF5
D
192 196Right-handed 310
Helix 51
AF6
D
197 220Right-handed alpha
Helix 52
AF7
D
224 246Right-handed alpha
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There are 4 sheets in PDB entry 9L0I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
147 148anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
147 148anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 39first strand
Strand 2
C
147 148anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 39first strand
Strand 2
D
147 148anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il