Analysis of interatomic Contacts of Structural Units in PDB entry:
9L0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L0M entry

There are 4 chains in PDB entry 9L0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3063PRO 4120
B
 LYS 215MET 698
C
 LYS 215MET 698
D
 LYS 215MET 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 9L0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3074 3082Right-handed alpha
Helix 2
AA2
A
3085 3106Right-handed alpha
Helix 3
AA3
A
3244 3257Right-handed alpha
Helix 4
AA4
A
3262 3266Right-handed 310
Helix 5
AA5
A
3279 3299Right-handed alpha
Helix 6
AA6
A
3309 3313Right-handed 310
Helix 7
AA7
A
3323 3341Right-handed alpha
Helix 8
AA8
A
3342 3344Right-handed 310
Helix 9
AA9
A
3553 3578Right-handed alpha
Helix 10
AB1
A
3583 3597Right-handed alpha
Helix 11
AB2
A
3603 3618Right-handed alpha
Helix 12
AB3
A
3656 3690Right-handed alpha
Helix 13
AB4
A
3695 3707Right-handed alpha
Helix 14
AB5
A
3710 3716Right-handed alpha
Helix 15
AB6
A
3722 3730Right-handed alpha
Helix 16
AB7
A
3730 3736Right-handed alpha
Helix 17
AB8
A
3826 3840Right-handed alpha
Helix 18
AB9
A
3892 3896Right-handed 310
Helix 19
AC1
A
3898 3926Right-handed alpha
Helix 20
AC2
A
3932 3936Right-handed 310
Helix 21
AC3
A
3938 3969Right-handed alpha
Helix 22
AC4
A
3970 3973Right-handed 310
Helix 23
AC5
A
3977 4005Right-handed alpha
Helix 24
AC6
A
4009 4012Right-handed 310
Helix 25
AC7
A
4013 4022Right-handed alpha
Helix 26
AC8
A
4022 4043Right-handed alpha
Helix 27
AC9
A
4092 4100Right-handed alpha
Helix 28
AD1
A
4100 4119Right-handed alpha
Helix 29
AD2
B
221 242Right-handed alpha
Helix 30
AD3
B
244 258Right-handed alpha
Helix 31
AD4
B
269 273Right-handed 310
Helix 32
AD5
B
275 284Right-handed alpha
Helix 33
AD6
B
287 292Right-handed alpha
Helix 34
AD7
B
334 338Right-handed 310
Helix 35
AD8
B
349 353Right-handed 310
Helix 36
AD9
B
398 412Right-handed alpha
Helix 37
AE1
B
467 493Right-handed alpha
Helix 38
AE2
B
508 530Right-handed alpha
Helix 39
AE3
B
532 541Right-handed alpha
Helix 40
AE4
B
548 572Right-handed alpha
Helix 41
AE5
B
573 577Right-handed 310
Helix 42
AE6
B
582 620Right-handed alpha
Helix 43
AE7
B
628 641Right-handed alpha
Helix 44
AE8
B
648 653Right-handed alpha
Helix 45
AE9
B
656 670Right-handed alpha
Helix 46
AF1
B
674 698Right-handed alpha
Helix 47
AF2
C
216 240Right-handed alpha
Helix 48
AF3
C
244 259Right-handed alpha
Helix 49
AF4
C
269 273Right-handed 310
Helix 50
AF5
C
275 284Right-handed alpha
Helix 51
AF6
C
285 292Right-handed alpha
Helix 52
AF7
C
334 338Right-handed 310
Helix 53
AF8
C
349 353Right-handed 310
Helix 54
AF9
C
363 367Right-handed 310
Helix 55
AG1
C
370 375Right-handed alpha
Helix 56
AG2
C
398 412Right-handed alpha
Helix 57
AG3
C
469 498Right-handed alpha
Helix 58
AG4
C
508 531Right-handed alpha
Helix 59
AG5
C
548 572Right-handed alpha
Helix 60
AG6
C
573 576Right-handed 310
Helix 61
AG7
C
580 593Right-handed alpha
Helix 62
AG8
C
595 619Right-handed alpha
Helix 63
AG9
C
628 642Right-handed alpha
Helix 64
AH1
C
648 653Right-handed alpha
Helix 65
AH2
C
657 670Right-handed alpha
Helix 66
AH3
C
673 698Right-handed alpha
Helix 67
AH4
D
222 240Right-handed alpha
Helix 68
AH5
D
243 258Right-handed alpha
Helix 69
AH6
D
269 273Right-handed 310
Helix 70
AH7
D
276 284Right-handed alpha
Helix 71
AH8
D
285 291Right-handed alpha
Helix 72
AH9
D
398 412Right-handed alpha
Helix 73
AI1
D
467 492Right-handed alpha
Helix 74
AI2
D
507 529Right-handed alpha
Helix 75
AI3
D
532 541Right-handed alpha
Helix 76
AI4
D
548 576Right-handed alpha
Helix 77
AI5
D
586 619Right-handed alpha
Helix 78
AI6
D
628 642Right-handed alpha
Helix 79
AI7
D
646 653Right-handed alpha
Helix 80
AI8
D
657 670Right-handed alpha
Helix 81
AI9
D
673 698Right-handed alpha
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There are 6 sheets in PDB entry 9L0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3135 3140first strand
Strand 2
A
3183 3189anti-parallel
Strand 3
A
3223 3226anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3748 3749first strand
Strand 2
A
3852 3853anti-parallel
Strand 3
A
3863 3872anti-parallel
Strand 4
A
3857 3858anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3748 3749first strand
Strand 2
A
3852 3853anti-parallel
Strand 3
A
3863 3872anti-parallel
Strand 4
A
3880 3888anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 394first strand
Strand 2
B
320 325anti-parallel
Strand 3
B
419 428anti-parallel
Strand 4
B
437 444anti-parallel
Strand 5
B
452 458anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
391 394first strand
Strand 2
C
320 325anti-parallel
Strand 3
C
419 428anti-parallel
Strand 4
C
437 444anti-parallel
Strand 5
C
452 458anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
368 369first strand
Strand 2
D
390 394anti-parallel
Strand 3
D
315 325anti-parallel
Strand 4
D
419 428anti-parallel
Strand 5
D
437 444anti-parallel
Strand 6
D
452 458anti-parallel
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