Analysis of interatomic Contacts of Structural Units in PDB entry:
9L0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L0Q entry

There are 2 chains in PDB entry 9L0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 456
B
 LYS 2GLU 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9L0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
30 37Right-handed alpha
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
53 68Right-handed alpha
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
91 108Right-handed alpha
Helix 7
AA7
A
122 127Right-handed alpha
Helix 8
AA8
A
128 134Right-handed 310
Helix 9
AA9
A
135 152Right-handed alpha
Helix 10
AB1
A
153 155Right-handed 310
Helix 11
AB2
A
163 173Right-handed alpha
Helix 12
AB3
A
184 210Right-handed alpha
Helix 13
AB4
A
230 242Right-handed alpha
Helix 14
AB5
A
254 265Right-handed alpha
Helix 15
AB6
A
268 275Right-handed alpha
Helix 16
AB7
A
276 279Right-handed 310
Helix 17
AB8
A
283 291Right-handed alpha
Helix 18
AB9
A
336 350Right-handed alpha
Helix 19
AC1
A
374 394Right-handed alpha
Helix 20
AC2
A
411 415Right-handed 310
Helix 21
AC3
A
435 448Right-handed alpha
Helix 22
AC4
B
14 19Right-handed alpha
Helix 23
AC5
B
30 37Right-handed alpha
Helix 24
AC6
B
42 46Right-handed 310
Helix 25
AC7
B
53 68Right-handed alpha
Helix 26
AC8
B
78 83Right-handed alpha
Helix 27
AC9
B
91 108Right-handed alpha
Helix 28
AD1
B
122 127Right-handed alpha
Helix 29
AD2
B
128 134Right-handed 310
Helix 30
AD3
B
135 152Right-handed alpha
Helix 31
AD4
B
153 155Right-handed 310
Helix 32
AD5
B
163 173Right-handed alpha
Helix 33
AD6
B
184 210Right-handed alpha
Helix 34
AD7
B
230 242Right-handed alpha
Helix 35
AD8
B
255 265Right-handed alpha
Helix 36
AD9
B
268 275Right-handed alpha
Helix 37
AE1
B
276 279Right-handed 310
Helix 38
AE2
B
283 291Right-handed alpha
Helix 39
AE3
B
336 350Right-handed alpha
Helix 40
AE4
B
374 394Right-handed alpha
Helix 41
AE5
B
411 415Right-handed 310
Helix 42
AE6
B
435 447Right-handed alpha
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There are 7 sheets in PDB entry 9L0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
157 162parallel
Strand 3
A
111 117parallel
Strand 4
A
72 76parallel
Strand 5
A
8 12parallel
Strand 6
A
398 404parallel
Strand 7
A
353 357parallel
Strand 8
A
297 300parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
304 306parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
315 316anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
432 434anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 218first strand
Strand 2
B
157 162parallel
Strand 3
B
111 117parallel
Strand 4
B
72 76parallel
Strand 5
B
8 12parallel
Strand 6
B
398 404parallel
Strand 7
B
353 357parallel
Strand 8
B
297 300parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
304 309parallel
Strand 3
B
315 316anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 425first strand
Strand 2
B
432 434anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il