Analysis of interatomic Contacts of Structural Units in PDB entry:
9L16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L16 entry

There are 2 chains in PDB entry 9L16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 SER 1PRO 73
R
 ASP 30GLY 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 9L16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
18 20Right-handed 310
Helix 2
AA2
L
57 67Right-handed alpha
Helix 3
AA3
R
40 44Right-handed 310
Helix 4
AA4
R
50 87Right-handed alpha
Helix 5
AA5
R
91 120Right-handed alpha
Helix 6
AA6
R
125 159Right-handed alpha
Helix 7
AA7
R
160 165Right-handed alpha
Helix 8
AA8
R
167 190Right-handed alpha
Helix 9
AA9
R
190 197Right-handed alpha
Helix 10
AB1
R
216 230Right-handed alpha
Helix 11
AB2
R
232 251Right-handed alpha
Helix 12
AB3
R
258 292Right-handed alpha
Helix 13
AB4
R
297 326Right-handed alpha
Helix 14
AB5
R
330 343Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9L16. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
22 25first strand
Strand 2
L
39 43anti-parallel
Strand 3
L
51 53anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
198 202first strand
Strand 2
R
206 211anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il