Analysis of interatomic Contacts of Structural Units in PDB entry:
9L35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L35 entry

There are 2 chains in PDB entry 9L35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 9	GLU 305
B	GLY 0	LYS 301

There are 6 helices in PDB entry 9L35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	25	Right-handed 310
Helix 2	AA2	A	65	69	Right-handed 310
Helix 3	AA3	A	300	305	Right-handed alpha
Helix 4	AA4	B	22	25	Right-handed 310
Helix 5	AA5	B	65	69	Right-handed 310
Helix 6	AA6	B	89	91	Right-handed 310

There are 12 sheets in PDB entry 9L35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	284	294	anti-parallel
Strand 3	A	268	278	anti-parallel
Strand 4	A	259	265	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	34	first strand
Strand 2	A	40	44	anti-parallel
Strand 3	A	47	51	anti-parallel
Strand 4	A	58	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	81	87	anti-parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	105	112	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	120	first strand
Strand 2	A	125	130	anti-parallel
Strand 3	A	140	145	anti-parallel
Strand 4	A	153	157	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	171	first strand
Strand 2	A	174	181	anti-parallel
Strand 3	A	190	196	anti-parallel
Strand 4	A	201	206	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	225	first strand
Strand 2	A	228	233	anti-parallel
Strand 3	A	237	241	anti-parallel
Strand 4	A	247	253	anti-parallel
Strand 5	A	298	299	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	284	294	anti-parallel
Strand 3	B	268	278	anti-parallel
Strand 4	B	259	265	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	40	44	anti-parallel
Strand 3	B	47	51	anti-parallel
Strand 4	B	58	63	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	78	first strand
Strand 2	B	81	87	anti-parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	105	112	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	120	first strand
Strand 2	B	125	130	anti-parallel
Strand 3	B	140	145	anti-parallel
Strand 4	B	153	157	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	171	first strand
Strand 2	B	174	181	anti-parallel
Strand 3	B	190	196	anti-parallel
Strand 4	B	201	206	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	225	first strand
Strand 2	B	228	233	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	247	253	anti-parallel
Strand 5	B	298	299	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L35

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L35