Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L3J entry

There are 2 chains in PDB entry 9L3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 21	VAL 569
B	ALA 21	VAL 569

There are 34 helices in PDB entry 9L3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	40	Right-handed alpha
Helix 2	AA2	A	65	74	Right-handed alpha
Helix 3	AA3	A	99	116	Right-handed alpha
Helix 4	AA4	A	126	131	Right-handed alpha
Helix 5	AA5	A	140	159	Right-handed alpha
Helix 6	AA6	A	178	199	Right-handed alpha
Helix 7	AA7	A	202	206	Right-handed 310
Helix 8	AA8	A	213	215	Right-handed 310
Helix 9	AA9	A	216	224	Right-handed alpha
Helix 10	AB1	A	243	249	Right-handed alpha
Helix 11	AB2	A	258	276	Right-handed alpha
Helix 12	AB3	A	294	312	Right-handed alpha
Helix 13	AB4	A	335	344	Right-handed alpha
Helix 14	AB5	A	418	423	Right-handed alpha
Helix 15	AB6	A	467	471	Right-handed alpha
Helix 16	AB7	A	502	508	Right-handed 310
Helix 17	AB8	A	532	543	Right-handed alpha
Helix 18	AB9	B	31	40	Right-handed alpha
Helix 19	AC1	B	65	74	Right-handed alpha
Helix 20	AC2	B	85	89	Right-handed 310
Helix 21	AC3	B	99	116	Right-handed alpha
Helix 22	AC4	B	126	131	Right-handed alpha
Helix 23	AC5	B	140	159	Right-handed alpha
Helix 24	AC6	B	178	199	Right-handed alpha
Helix 25	AC7	B	202	206	Right-handed 310
Helix 26	AC8	B	212	215	Right-handed 310
Helix 27	AC9	B	216	224	Right-handed alpha
Helix 28	AD1	B	243	248	Right-handed alpha
Helix 29	AD2	B	258	276	Right-handed alpha
Helix 30	AD3	B	294	312	Right-handed alpha
Helix 31	AD4	B	335	344	Right-handed alpha
Helix 32	AD5	B	418	423	Right-handed alpha
Helix 33	AD6	B	502	508	Right-handed 310
Helix 34	AD7	B	532	543	Right-handed alpha

There are 10 sheets in PDB entry 9L3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	78	81	parallel
Strand 3	A	119	123	parallel
Strand 4	A	166	169	parallel
Strand 5	A	208	211	parallel
Strand 6	A	234	238	parallel
Strand 7	A	281	283	parallel
Strand 8	A	314	318	parallel
Strand 9	A	42	44	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	414	417	anti-parallel
Strand 4	A	409	411	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	372	first strand
Strand 2	A	449	455	parallel
Strand 3	A	433	442	anti-parallel
Strand 4	A	391	396	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	475	480	anti-parallel
Strand 3	A	528	531	anti-parallel
Strand 4	A	522	524	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	A	562	568	parallel
Strand 3	A	546	551	anti-parallel
Strand 4	A	489	494	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	78	81	parallel
Strand 3	B	119	123	parallel
Strand 4	B	166	169	parallel
Strand 5	B	208	210	parallel
Strand 6	B	234	239	parallel
Strand 7	B	281	285	parallel
Strand 8	B	314	318	parallel
Strand 9	B	42	44	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	380	385	anti-parallel
Strand 3	B	414	417	anti-parallel
Strand 4	B	409	411	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	372	first strand
Strand 2	B	449	455	parallel
Strand 3	B	433	442	anti-parallel
Strand 4	B	391	396	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	475	480	anti-parallel
Strand 3	B	528	531	anti-parallel
Strand 4	B	522	524	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	466	first strand
Strand 2	B	562	568	parallel
Strand 3	B	546	551	anti-parallel
Strand 4	B	489	494	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3J