Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L3L entry

There are 4 chains in PDB entry 9L3L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 765PHE 872
B
 MET 1GLY 76
C
 MET 1GLY 47
C
 GLN 49LEU 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9L3L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
766 773Right-handed alpha
Helix 2
AA2
A
784 796Right-handed alpha
Helix 3
AA3
A
798 811Right-handed alpha
Helix 4
AA4
A
819 824Right-handed 310
Helix 5
AA5
A
854 869Right-handed alpha
Helix 6
AA6
B
22 35Right-handed alpha
Helix 7
AA7
B
37 39Right-handed 310
Helix 8
AA8
C
22 35Right-handed alpha
Helix 9
AA9
C
37 39Right-handed 310
Helix 10
AB1
C
56 60Right-handed 310
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There are 3 sheets in PDB entry 9L3L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 777first strand
Strand 2
A
826 829parallel
Strand 3
A
846 849parallel
Strand 4
A
839 841anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il