Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L3O entry

There are 2 chains in PDB entry 9L3O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20VAL 569
B
 SER 20VAL 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9L3O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 40Right-handed alpha
Helix 2
AA2
A
65 74Right-handed alpha
Helix 3
AA3
A
85 89Right-handed 310
Helix 4
AA4
A
99 115Right-handed alpha
Helix 5
AA5
A
126 131Right-handed alpha
Helix 6
AA6
A
140 159Right-handed alpha
Helix 7
AA7
A
178 200Right-handed alpha
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
A
212 215Right-handed 310
Helix 10
AB1
A
216 224Right-handed alpha
Helix 11
AB2
A
243 248Right-handed alpha
Helix 12
AB3
A
258 276Right-handed alpha
Helix 13
AB4
A
294 312Right-handed alpha
Helix 14
AB5
A
335 344Right-handed alpha
Helix 15
AB6
A
418 423Right-handed alpha
Helix 16
AB7
A
468 470Right-handed 310
Helix 17
AB8
A
502 508Right-handed 310
Helix 18
AB9
A
532 543Right-handed alpha
Helix 19
AC1
B
31 39Right-handed alpha
Helix 20
AC2
B
65 74Right-handed alpha
Helix 21
AC3
B
85 89Right-handed 310
Helix 22
AC4
B
99 115Right-handed alpha
Helix 23
AC5
B
126 131Right-handed alpha
Helix 24
AC6
B
140 159Right-handed alpha
Helix 25
AC7
B
178 200Right-handed alpha
Helix 26
AC8
B
202 206Right-handed 310
Helix 27
AC9
B
212 215Right-handed 310
Helix 28
AD1
B
216 224Right-handed alpha
Helix 29
AD2
B
243 248Right-handed alpha
Helix 30
AD3
B
258 276Right-handed alpha
Helix 31
AD4
B
294 312Right-handed alpha
Helix 32
AD5
B
335 344Right-handed alpha
Helix 33
AD6
B
418 423Right-handed alpha
Helix 34
AD7
B
468 471Right-handed 310
Helix 35
AD8
B
502 508Right-handed 310
Helix 36
AD9
B
532 543Right-handed alpha
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There are 10 sheets in PDB entry 9L3O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
78 81parallel
Strand 3
A
119 122parallel
Strand 4
A
166 169parallel
Strand 5
A
208 210parallel
Strand 6
A
234 239parallel
Strand 7
A
281 285parallel
Strand 8
A
314 318parallel
Strand 9
A
42 44parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
380 385anti-parallel
Strand 3
A
414 417anti-parallel
Strand 4
A
409 411anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 372first strand
Strand 2
A
449 455parallel
Strand 3
A
433 442anti-parallel
Strand 4
A
391 396anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
475 480anti-parallel
Strand 3
A
528 531anti-parallel
Strand 4
A
522 524anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 466first strand
Strand 2
A
562 568parallel
Strand 3
A
546 551anti-parallel
Strand 4
A
489 494anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
78 81parallel
Strand 3
B
119 123parallel
Strand 4
B
166 169parallel
Strand 5
B
208 210parallel
Strand 6
B
234 239parallel
Strand 7
B
281 285parallel
Strand 8
B
314 318parallel
Strand 9
B
42 44parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 352first strand
Strand 2
B
380 385anti-parallel
Strand 3
B
414 417anti-parallel
Strand 4
B
409 411anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 372first strand
Strand 2
B
449 455parallel
Strand 3
B
433 442anti-parallel
Strand 4
B
391 396anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 460first strand
Strand 2
B
475 480anti-parallel
Strand 3
B
528 531anti-parallel
Strand 4
B
522 524anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 466first strand
Strand 2
B
562 568parallel
Strand 3
B
546 552anti-parallel
Strand 4
B
487 494anti-parallel
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