Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L3P entry

There is 1 chain in PDB entry 9L3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21VAL 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9L3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 40Right-handed alpha
Helix 2
AA2
A
65 74Right-handed alpha
Helix 3
AA3
A
85 89Right-handed 310
Helix 4
AA4
A
99 116Right-handed alpha
Helix 5
AA5
A
126 131Right-handed alpha
Helix 6
AA6
A
140 159Right-handed alpha
Helix 7
AA7
A
178 200Right-handed alpha
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
A
213 215Right-handed 310
Helix 10
AB1
A
216 224Right-handed alpha
Helix 11
AB2
A
243 248Right-handed alpha
Helix 12
AB3
A
258 275Right-handed alpha
Helix 13
AB4
A
294 312Right-handed alpha
Helix 14
AB5
A
335 344Right-handed alpha
Helix 15
AB6
A
418 423Right-handed alpha
Helix 16
AB7
A
468 471Right-handed 310
Helix 17
AB8
A
502 508Right-handed 310
Helix 18
AB9
A
532 543Right-handed alpha
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There are 5 sheets in PDB entry 9L3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
78 81parallel
Strand 3
A
119 122parallel
Strand 4
A
166 169parallel
Strand 5
A
208 211parallel
Strand 6
A
234 239parallel
Strand 7
A
281 285parallel
Strand 8
A
314 318parallel
Strand 9
A
42 44parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
380 385anti-parallel
Strand 3
A
414 417anti-parallel
Strand 4
A
409 411anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 372first strand
Strand 2
A
449 455parallel
Strand 3
A
433 442anti-parallel
Strand 4
A
391 396anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 460first strand
Strand 2
A
475 480anti-parallel
Strand 3
A
528 531anti-parallel
Strand 4
A
522 524anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 466first strand
Strand 2
A
562 568parallel
Strand 3
A
546 552anti-parallel
Strand 4
A
487 494anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il