Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L3V entry

There are 6 chains in PDB entry 9L3V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ARG 439
B	SER 5	ILE 422
C	PHE 1	ARG 439
D	SER 5	ILE 422
E	PHE 1	ARG 439
F	SER 5	ILE 422

There are 36 helices in PDB entry 9L3V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	112	116	Right-handed 310
Helix 2	AA2	A	238	246	Right-handed alpha
Helix 3	AA3	A	255	259	Right-handed 310
Helix 4	AA4	A	283	287	Right-handed 310
Helix 5	AA5	A	398	402	Right-handed 310
Helix 6	AA6	A	403	439	Right-handed alpha
Helix 7	AA7	B	180	182	Right-handed 310
Helix 8	AA8	B	226	228	Right-handed 310
Helix 9	AA9	B	355	366	Right-handed alpha
Helix 10	AB1	B	367	375	Right-handed alpha
Helix 11	AB2	B	375	402	Right-handed alpha
Helix 12	AB3	B	413	421	Right-handed alpha
Helix 13	AB4	C	112	116	Right-handed 310
Helix 14	AB5	C	238	246	Right-handed alpha
Helix 15	AB6	C	255	259	Right-handed 310
Helix 16	AB7	C	283	287	Right-handed 310
Helix 17	AB8	C	398	402	Right-handed 310
Helix 18	AB9	C	403	439	Right-handed alpha
Helix 19	AC1	D	180	182	Right-handed 310
Helix 20	AC2	D	226	228	Right-handed 310
Helix 21	AC3	D	355	366	Right-handed alpha
Helix 22	AC4	D	367	374	Right-handed alpha
Helix 23	AC5	D	375	402	Right-handed alpha
Helix 24	AC6	D	413	421	Right-handed alpha
Helix 25	AC7	E	112	116	Right-handed 310
Helix 26	AC8	E	238	246	Right-handed alpha
Helix 27	AC9	E	255	259	Right-handed 310
Helix 28	AD1	E	283	287	Right-handed 310
Helix 29	AD2	E	398	402	Right-handed 310
Helix 30	AD3	E	403	439	Right-handed alpha
Helix 31	AD4	F	180	182	Right-handed 310
Helix 32	AD5	F	226	228	Right-handed 310
Helix 33	AD6	F	355	366	Right-handed alpha
Helix 34	AD7	F	367	375	Right-handed alpha
Helix 35	AD8	F	375	402	Right-handed alpha
Helix 36	AD9	F	413	421	Right-handed alpha

There are 64 sheets in PDB entry 9L3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	161	163	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	A	27	48	anti-parallel
Strand 3	A	119	137	anti-parallel
Strand 4	A	176	180	anti-parallel
Strand 5	A	183	186	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	147	first strand
Strand 2	A	119	137	anti-parallel
Strand 3	A	27	48	anti-parallel
Strand 4	A	267	269	anti-parallel
Strand 5	A	260	262	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	102	110	anti-parallel
Strand 3	A	59	60	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	102	110	anti-parallel
Strand 3	A	77	81	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	91	92	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	214	215	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	233	234	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	303	first strand
Strand 2	A	314	322	anti-parallel
Strand 3	A	349	358	anti-parallel
Strand 4	A	337	339	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	A	366	369	anti-parallel
Strand 3	A	372	375	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	378	379	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	330	334	anti-parallel
Strand 4	B	286	303	anti-parallel
Strand 5	B	279	280	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	330	334	anti-parallel
Strand 4	B	286	303	anti-parallel
Strand 5	B	311	324	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	29	31	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	46	57	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	79	83	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	46	57	anti-parallel
Strand 3	B	96	108	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	112	119	anti-parallel
Strand 3	B	127	134	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	159	first strand
Strand 2	B	265	272	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	166	173	anti-parallel
Strand 3	B	257	262	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	191	193	anti-parallel
Strand 3	B	219	221	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	215	first strand
Strand 2	B	201	206	anti-parallel
Strand 3	B	230	234	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	8	first strand
Strand 2	C	275	281	anti-parallel
Strand 3	C	161	163	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	C	27	48	anti-parallel
Strand 3	C	119	137	anti-parallel
Strand 4	C	176	180	anti-parallel
Strand 5	C	183	186	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	147	first strand
Strand 2	C	119	137	anti-parallel
Strand 3	C	27	48	anti-parallel
Strand 4	C	267	269	anti-parallel
Strand 5	C	260	262	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	102	110	anti-parallel
Strand 3	C	59	60	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	102	110	anti-parallel
Strand 3	C	77	81	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	91	92	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	214	215	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	233	234	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	303	first strand
Strand 2	C	314	322	anti-parallel
Strand 3	C	349	358	anti-parallel
Strand 4	C	337	339	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	332	first strand
Strand 2	C	366	369	anti-parallel
Strand 3	C	372	375	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	378	379	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	D	340	344	anti-parallel
Strand 3	D	330	334	anti-parallel
Strand 4	D	286	303	anti-parallel
Strand 5	D	279	280	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	D	340	344	anti-parallel
Strand 3	D	330	334	anti-parallel
Strand 4	D	286	303	anti-parallel
Strand 5	D	311	324	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	257	262	parallel
Strand 3	D	166	173	anti-parallel
Strand 4	D	241	242	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	29	31	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	46	57	anti-parallel
Strand 3	D	63	71	anti-parallel
Strand 4	D	79	83	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	46	57	anti-parallel
Strand 3	D	96	108	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	112	119	anti-parallel
Strand 3	D	127	134	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	159	first strand
Strand 2	D	265	272	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	186	first strand
Strand 2	D	191	193	anti-parallel
Strand 3	D	219	221	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	215	first strand
Strand 2	D	201	206	anti-parallel
Strand 3	D	230	234	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	8	first strand
Strand 2	E	275	281	anti-parallel
Strand 3	E	161	163	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	19	first strand
Strand 2	E	27	39	anti-parallel
Strand 3	E	128	137	anti-parallel
Strand 4	E	140	147	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	19	first strand
Strand 2	E	27	39	anti-parallel
Strand 3	E	267	269	anti-parallel
Strand 4	E	260	262	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	48	first strand
Strand 2	E	119	124	anti-parallel
Strand 3	E	176	180	anti-parallel
Strand 4	E	183	186	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	102	110	anti-parallel
Strand 3	E	59	60	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	102	110	anti-parallel
Strand 3	E	77	81	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	91	92	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	203	204	first strand
Strand 2	E	214	215	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	221	first strand
Strand 2	E	233	234	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	296	303	first strand
Strand 2	E	314	322	anti-parallel
Strand 3	E	349	358	anti-parallel
Strand 4	E	337	339	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	332	first strand
Strand 2	E	366	369	anti-parallel
Strand 3	E	372	375	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	362	363	first strand
Strand 2	E	378	379	anti-parallel

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There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	388	first strand
Strand 2	F	340	344	anti-parallel
Strand 3	F	330	334	anti-parallel
Strand 4	F	286	303	anti-parallel
Strand 5	F	279	280	anti-parallel

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There are 5 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	388	first strand
Strand 2	F	340	344	anti-parallel
Strand 3	F	330	334	anti-parallel
Strand 4	F	286	303	anti-parallel
Strand 5	F	311	324	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	257	262	parallel
Strand 3	F	166	173	anti-parallel
Strand 4	F	241	242	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	29	31	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	39	first strand
Strand 2	F	46	57	anti-parallel
Strand 3	F	63	71	anti-parallel
Strand 4	F	79	83	anti-parallel

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There are 3 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	39	first strand
Strand 2	F	46	57	anti-parallel
Strand 3	F	96	108	anti-parallel

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There are 3 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	90	first strand
Strand 2	F	112	119	anti-parallel
Strand 3	F	127	134	anti-parallel

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There are 2 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	159	first strand
Strand 2	F	265	272	anti-parallel

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There are 3 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	186	first strand
Strand 2	F	191	193	anti-parallel
Strand 3	F	219	221	anti-parallel

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There are 3 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	215	first strand
Strand 2	F	201	206	anti-parallel
Strand 3	F	230	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L3V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3V