Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L3Y entry

There are 5 chains in PDB entry 9L3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	PHE 12	PHE 315
L	THR 23	SER 157
A	SER 6	PHE 354
B	LEU 7	ASN 340
C	ALA 12	ARG 62

There are 23 helices in PDB entry 9L3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	36	52	Right-handed alpha
Helix 2	AA2	R	52	63	Right-handed alpha
Helix 3	AA3	R	70	99	Right-handed alpha
Helix 4	AA4	R	106	141	Right-handed alpha
Helix 5	AA5	R	150	167	Right-handed alpha
Helix 6	AA6	R	202	215	Right-handed alpha
Helix 7	AA7	R	215	233	Right-handed alpha
Helix 8	AA8	R	234	236	Right-handed 310
Helix 9	AA9	R	240	268	Right-handed alpha
Helix 10	AB1	R	284	305	Right-handed alpha
Helix 11	AB2	L	24	40	Right-handed alpha
Helix 12	AB3	L	134	140	Right-handed alpha
Helix 13	AB4	A	7	32	Right-handed alpha
Helix 14	AB5	A	208	213	Right-handed alpha
Helix 15	AB6	A	214	216	Right-handed 310
Helix 16	AB7	A	242	255	Right-handed alpha
Helix 17	AB8	A	270	281	Right-handed alpha
Helix 18	AB9	A	295	309	Right-handed alpha
Helix 19	AC1	A	330	352	Right-handed alpha
Helix 20	AC2	B	8	26	Right-handed alpha
Helix 21	AC3	B	29	34	Right-handed alpha
Helix 22	AC4	C	13	24	Right-handed alpha
Helix 23	AC5	C	29	45	Right-handed alpha

There are 9 sheets in PDB entry 9L3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	177	178	first strand
Strand 2	R	187	188	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	190	first strand
Strand 2	A	195	201	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	259	265	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3Y