Analysis of interatomic Contacts of Structural Units in PDB entry:
9L3Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L3Z entry

There are 4 chains in PDB entry 9L3Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 4PRO 227
L
 ASP 2PHE 211
A
 VAL 38GLN 435
C
 HIS 1HIS 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9L3Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
107 112Right-handed alpha
Helix 2
AA2
A
39 67Right-handed alpha
Helix 3
AA3
A
76 91Right-handed alpha
Helix 4
AA4
A
115 142Right-handed alpha
Helix 5
AA5
A
143 148Right-handed alpha
Helix 6
AA6
A
155 168Right-handed alpha
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
221 229Right-handed alpha
Helix 9
AA9
A
229 274Right-handed alpha
Helix 10
AB1
A
277 298Right-handed alpha
Helix 11
AB2
A
310 336Right-handed alpha
Helix 12
AB3
A
339 356Right-handed alpha
Helix 13
AB4
A
356 363Right-handed alpha
Helix 14
AB5
A
375 393Right-handed alpha
Helix 15
AB6
A
412 435Right-handed alpha
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There are 11 sheets in PDB entry 9L3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 8first strand
Strand 2
H
26 28anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 15first strand
Strand 2
H
121 125parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
36 42anti-parallel
Strand 5
H
48 54anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
21 23first strand
Strand 2
H
84 86anti-parallel
Strand 3
H
72 73anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
136 138first strand
Strand 2
H
150 157anti-parallel
Strand 3
H
190 198anti-parallel
Strand 4
H
177 179anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
136 138first strand
Strand 2
H
150 157anti-parallel
Strand 3
H
190 198anti-parallel
Strand 4
H
183 184anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
165 168first strand
Strand 2
H
209 213anti-parallel
Strand 3
H
222 224anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 6first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 66anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 12first strand
Strand 2
L
104 106parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 50anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
116 120first strand
Strand 2
L
135 139anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
146 149first strand
Strand 2
L
195 200anti-parallel
Strand 3
L
207 210anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
164 165first strand
Strand 2
L
177 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il