Analysis of interatomic Contacts of Structural Units in PDB entry:
9L41

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L41 entry

There are 9 chains in PDB entry 9L41 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	ARG 439
B	SER 5	ILE 422
R	GLN 1	ASP 96
C	PHE 1	ARG 439
D	SER 5	ILE 422
S	GLN 1	ASP 96
E	PHE 1	ARG 439
F	SER 5	ILE 422
T	GLN 1	ASP 96

There are 42 helices in PDB entry 9L41. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	238	246	Right-handed alpha
Helix 2	AA2	A	250	254	Right-handed 310
Helix 3	AA3	A	283	287	Right-handed 310
Helix 4	AA4	A	398	402	Right-handed 310
Helix 5	AA5	A	403	438	Right-handed alpha
Helix 6	AA6	B	9	13	Right-handed 310
Helix 7	AA7	B	180	182	Right-handed 310
Helix 8	AA8	B	355	367	Right-handed alpha
Helix 9	AA9	B	367	372	Right-handed alpha
Helix 10	AB1	B	374	405	Right-handed alpha
Helix 11	AB2	B	413	418	Right-handed alpha
Helix 12	AB3	R	18	24	Right-handed alpha
Helix 13	AB4	R	29	34	Right-handed alpha
Helix 14	AB5	R	62	67	Right-handed alpha
Helix 15	AB6	C	238	246	Right-handed alpha
Helix 16	AB7	C	250	254	Right-handed 310
Helix 17	AB8	C	283	287	Right-handed 310
Helix 18	AB9	C	398	402	Right-handed 310
Helix 19	AC1	C	403	438	Right-handed alpha
Helix 20	AC2	D	9	13	Right-handed 310
Helix 21	AC3	D	180	182	Right-handed 310
Helix 22	AC4	D	355	367	Right-handed alpha
Helix 23	AC5	D	367	372	Right-handed alpha
Helix 24	AC6	D	374	405	Right-handed alpha
Helix 25	AC7	D	413	418	Right-handed alpha
Helix 26	AC8	S	18	24	Right-handed alpha
Helix 27	AC9	S	29	34	Right-handed alpha
Helix 28	AD1	S	62	67	Right-handed alpha
Helix 29	AD2	E	238	246	Right-handed alpha
Helix 30	AD3	E	250	254	Right-handed 310
Helix 31	AD4	E	283	287	Right-handed 310
Helix 32	AD5	E	398	402	Right-handed 310
Helix 33	AD6	E	403	438	Right-handed alpha
Helix 34	AD7	F	9	13	Right-handed 310
Helix 35	AD8	F	180	182	Right-handed 310
Helix 36	AD9	F	355	367	Right-handed alpha
Helix 37	AE1	F	367	372	Right-handed alpha
Helix 38	AE2	F	374	405	Right-handed alpha
Helix 39	AE3	F	413	418	Right-handed alpha
Helix 40	AE4	T	18	24	Right-handed alpha
Helix 41	AE5	T	29	34	Right-handed alpha
Helix 42	AE6	T	62	67	Right-handed alpha

There are 69 sheets in PDB entry 9L41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3, AH4, AH5, AH6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	160	163	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	19	first strand
Strand 2	A	27	48	anti-parallel
Strand 3	A	119	137	anti-parallel
Strand 4	A	176	180	anti-parallel
Strand 5	A	183	186	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	147	first strand
Strand 2	A	119	137	anti-parallel
Strand 3	A	27	48	anti-parallel
Strand 4	A	267	269	anti-parallel
Strand 5	A	260	262	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	102	110	anti-parallel
Strand 3	A	59	60	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	102	110	anti-parallel
Strand 3	A	77	81	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	91	92	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	214	215	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	233	234	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	316	321	anti-parallel
Strand 3	A	349	354	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	A	366	369	anti-parallel
Strand 3	A	372	375	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	339	first strand
Strand 2	A	356	358	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	378	379	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	330	334	anti-parallel
Strand 4	B	293	303	anti-parallel
Strand 5	B	313	317	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	29	31	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	46	57	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	79	83	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	46	57	anti-parallel
Strand 3	B	96	108	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	112	119	anti-parallel
Strand 3	B	129	134	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	159	first strand
Strand 2	B	265	272	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	169	173	anti-parallel
Strand 3	B	257	260	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	190	193	anti-parallel
Strand 3	B	219	221	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	215	first strand
Strand 2	B	201	206	anti-parallel
Strand 3	B	230	234	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	283	first strand
Strand 2	B	286	290	anti-parallel
Strand 3	B	320	323	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	3	6	first strand
Strand 2	R	88	94	parallel
Strand 3	R	74	80	anti-parallel
Strand 4	R	36	37	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	8	first strand
Strand 2	C	275	281	anti-parallel
Strand 3	C	160	163	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	C	27	48	anti-parallel
Strand 3	C	119	137	anti-parallel
Strand 4	C	176	180	anti-parallel
Strand 5	C	183	186	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	147	first strand
Strand 2	C	119	137	anti-parallel
Strand 3	C	27	48	anti-parallel
Strand 4	C	267	269	anti-parallel
Strand 5	C	260	262	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	102	110	anti-parallel
Strand 3	C	59	60	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	102	110	anti-parallel
Strand 3	C	77	81	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	91	92	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	214	215	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	233	234	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	316	321	anti-parallel
Strand 3	C	349	354	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	332	first strand
Strand 2	C	366	369	anti-parallel
Strand 3	C	372	375	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	356	358	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	378	379	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	388	first strand
Strand 2	D	340	344	anti-parallel
Strand 3	D	330	334	anti-parallel
Strand 4	D	293	303	anti-parallel
Strand 5	D	313	317	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	29	31	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	46	57	anti-parallel
Strand 3	D	63	71	anti-parallel
Strand 4	D	79	83	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	46	57	anti-parallel
Strand 3	D	96	108	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	112	119	anti-parallel
Strand 3	D	129	134	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	159	first strand
Strand 2	D	265	272	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	242	first strand
Strand 2	D	169	173	anti-parallel
Strand 3	D	257	260	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	187	first strand
Strand 2	D	190	193	anti-parallel
Strand 3	D	219	221	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	215	first strand
Strand 2	D	201	206	anti-parallel
Strand 3	D	230	234	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	283	first strand
Strand 2	D	286	290	anti-parallel
Strand 3	D	320	323	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	6	first strand
Strand 2	S	88	94	parallel
Strand 3	S	74	80	anti-parallel
Strand 4	S	36	37	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	8	first strand
Strand 2	E	275	281	anti-parallel
Strand 3	E	160	163	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	19	first strand
Strand 2	E	27	48	anti-parallel
Strand 3	E	119	137	anti-parallel
Strand 4	E	176	180	anti-parallel
Strand 5	E	183	186	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	147	first strand
Strand 2	E	119	137	anti-parallel
Strand 3	E	27	48	anti-parallel
Strand 4	E	267	269	anti-parallel
Strand 5	E	260	262	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	102	110	anti-parallel
Strand 3	E	59	60	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	102	110	anti-parallel
Strand 3	E	77	81	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	91	92	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	203	204	first strand
Strand 2	E	214	215	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	221	first strand
Strand 2	E	233	234	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	303	first strand
Strand 2	E	316	321	anti-parallel
Strand 3	E	349	354	anti-parallel

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There are 3 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	332	first strand
Strand 2	E	366	369	anti-parallel
Strand 3	E	372	375	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	339	first strand
Strand 2	E	356	358	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	362	363	first strand
Strand 2	E	378	379	anti-parallel

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There are 5 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	387	388	first strand
Strand 2	F	340	344	anti-parallel
Strand 3	F	330	334	anti-parallel
Strand 4	F	293	303	anti-parallel
Strand 5	F	313	317	anti-parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	29	31	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	39	first strand
Strand 2	F	46	57	anti-parallel
Strand 3	F	63	71	anti-parallel
Strand 4	F	79	83	anti-parallel

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There are 3 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	39	first strand
Strand 2	F	46	57	anti-parallel
Strand 3	F	96	108	anti-parallel

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There are 3 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	90	first strand
Strand 2	F	112	119	anti-parallel
Strand 3	F	129	134	anti-parallel

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There are 2 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	159	first strand
Strand 2	F	265	272	anti-parallel

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There are 3 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	241	242	first strand
Strand 2	F	169	173	anti-parallel
Strand 3	F	257	260	anti-parallel

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There are 3 strands in AH3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	187	first strand
Strand 2	F	190	193	anti-parallel
Strand 3	F	219	221	anti-parallel

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There are 3 strands in AH4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	215	first strand
Strand 2	F	201	206	anti-parallel
Strand 3	F	230	234	anti-parallel

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There are 3 strands in AH5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	283	first strand
Strand 2	F	286	290	anti-parallel
Strand 3	F	320	323	anti-parallel

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There are 4 strands in AH6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	3	6	first strand
Strand 2	T	88	94	parallel
Strand 3	T	74	80	anti-parallel
Strand 4	T	36	37	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 9L41

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L41