Analysis of interatomic Contacts of Structural Units in PDB entry:
9L4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L4J entry

There are 4 chains in PDB entry 9L4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 97	ASN 1059
B	PRO 155	TYR 581
D	SER 26	GLU 114
E	SER 34	LEU 89

There are 56 helices in PDB entry 9L4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	97	110	Right-handed alpha
Helix 2	AA2	A	119	128	Right-handed alpha
Helix 3	AA3	A	150	165	Right-handed alpha
Helix 4	AA4	A	189	198	Right-handed alpha
Helix 5	AA5	A	201	209	Right-handed alpha
Helix 6	AA6	A	210	213	Right-handed 310
Helix 7	AA7	A	221	228	Right-handed 310
Helix 8	AA8	A	246	255	Right-handed alpha
Helix 9	AA9	A	272	277	Right-handed alpha
Helix 10	AB1	A	292	302	Right-handed alpha
Helix 11	AB2	A	309	319	Right-handed alpha
Helix 12	AB3	A	320	327	Right-handed alpha
Helix 13	AB4	A	329	346	Right-handed alpha
Helix 14	AB5	A	347	350	Right-handed 310
Helix 15	AB6	A	356	370	Right-handed alpha
Helix 16	AB7	A	380	400	Right-handed alpha
Helix 17	AB8	A	407	413	Right-handed alpha
Helix 18	AB9	A	416	424	Right-handed alpha
Helix 19	AC1	A	444	454	Right-handed alpha
Helix 20	AC2	A	454	459	Right-handed alpha
Helix 21	AC3	A	463	467	Right-handed 310
Helix 22	AC4	A	488	498	Right-handed alpha
Helix 23	AC5	A	500	512	Right-handed alpha
Helix 24	AC6	A	518	532	Right-handed alpha
Helix 25	AC7	A	538	553	Right-handed alpha
Helix 26	AC8	A	554	562	Right-handed alpha
Helix 27	AC9	A	575	586	Right-handed alpha
Helix 28	AD1	A	624	637	Right-handed alpha
Helix 29	AD2	A	653	665	Right-handed alpha
Helix 30	AD3	A	681	684	Right-handed 310
Helix 31	AD4	A	685	695	Right-handed alpha
Helix 32	AD5	A	709	722	Right-handed alpha
Helix 33	AD6	A	738	751	Right-handed alpha
Helix 34	AD7	A	766	778	Right-handed alpha
Helix 35	AD8	A	795	807	Right-handed alpha
Helix 36	AD9	A	822	836	Right-handed alpha
Helix 37	AE1	A	854	864	Right-handed alpha
Helix 38	AE2	A	879	892	Right-handed alpha
Helix 39	AE3	A	909	911	Right-handed 310
Helix 40	AE4	A	912	923	Right-handed alpha
Helix 41	AE5	A	936	945	Right-handed alpha
Helix 42	AE6	A	966	968	Right-handed 310
Helix 43	AE7	A	969	980	Right-handed alpha
Helix 44	AE8	A	994	1006	Right-handed alpha
Helix 45	AE9	A	1018	1022	Right-handed 310
Helix 46	AF1	A	1023	1037	Right-handed alpha
Helix 47	AF2	A	1045	1049	Right-handed 310
Helix 48	AF3	B	157	174	Right-handed alpha
Helix 49	AF4	B	254	258	Right-handed 310
Helix 50	AF5	D	37	41	Right-handed 310
Helix 51	AF6	D	51	59	Right-handed alpha
Helix 52	AF7	D	63	73	Right-handed alpha
Helix 53	AF8	D	94	114	Right-handed alpha
Helix 54	AF9	E	35	40	Right-handed alpha
Helix 55	AG1	E	51	55	Right-handed 310
Helix 56	AG2	E	72	88	Right-handed alpha

There are 14 sheets in PDB entry 9L4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	178	first strand
Strand 2	A	215	220	parallel
Strand 3	A	263	269	parallel
Strand 4	A	140	145	parallel
Strand 5	A	284	289	parallel
Strand 6	D	28	32	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	244	245	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	439	442	anti-parallel
Strand 3	A	429	432	anti-parallel

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There are 17 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	571	first strand
Strand 2	A	593	597	parallel
Strand 3	A	644	646	parallel
Strand 4	A	673	675	parallel
Strand 5	A	700	702	parallel
Strand 6	A	729	731	parallel
Strand 7	A	757	759	parallel
Strand 8	A	786	788	parallel
Strand 9	A	814	816	parallel
Strand 10	A	843	845	parallel
Strand 11	A	871	873	parallel
Strand 12	A	900	902	parallel
Strand 13	A	928	930	parallel
Strand 14	A	957	959	parallel
Strand 15	A	985	987	parallel
Strand 16	A	1014	1016	parallel
Strand 17	A	1041	1042	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	290	first strand
Strand 2	B	573	580	anti-parallel
Strand 3	B	565	570	anti-parallel
Strand 4	B	554	559	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	302	first strand
Strand 2	B	307	311	anti-parallel
Strand 3	B	315	320	anti-parallel
Strand 4	B	333	336	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	357	361	anti-parallel
Strand 3	B	367	372	anti-parallel
Strand 4	B	380	385	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	396	first strand
Strand 2	B	401	406	anti-parallel
Strand 3	B	412	415	anti-parallel
Strand 4	B	421	424	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	438	first strand
Strand 2	B	441	445	anti-parallel
Strand 3	B	450	455	anti-parallel
Strand 4	B	461	466	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	476	first strand
Strand 2	B	482	487	anti-parallel
Strand 3	B	492	496	anti-parallel
Strand 4	B	503	506	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	518	first strand
Strand 2	B	524	529	anti-parallel
Strand 3	B	533	538	anti-parallel
Strand 4	B	543	549	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	76	77	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	80	81	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	43	first strand
Strand 2	E	57	60	anti-parallel
Strand 3	E	66	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L4J