Analysis of interatomic Contacts of Structural Units in PDB entry:
9L5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L5V entry

There are 46 chains in PDB entry 9L5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 10	ALA 336
B	GLY 2	GLY 483
C	ILE 37	ILE 486
D	ARG 11	LEU 351
E	TYR 20	GLY 83
F	THR 14	ARG 42
H	ALA 2	GLY 66
I	MET 1	LYS 35
K	LYS 9	ARG 45
L	SER 2	ASN 38
M	ASN 2	SER 37
T	MET 1	ALA 30
W	GLU 29	ARG 73
X	MET 1	ASP 34
Y	VAL 7	LEU 34
Z	MET 1	VAL 61
a	SER 10	ALA 336
b	GLY 2	ILE 482
c	ALA 38	ILE 486
d	ARG 11	LEU 351
e	TYR 20	GLY 83
f	PHE 13	ARG 42
h	ALA 2	GLY 66
i	MET 1	LYS 35
k	LYS 9	ARG 45
l	SER 2	ASN 38
m	ASN 2	SER 37
t	MET 1	ALA 30
w	GLU 29	ARG 73
x	MET 1	ASP 34
y	VAL 7	LEU 34
z	MET 1	VAL 61
1	TYR 41	PRO 232
N	TYR 41	PRO 232
2	PHE 45	LEU 218
3	ASP 40	TYR 219
4	GLY 56	THR 215
5	ALA 41	PHE 229
6	ASN 65	ILE 237
G	GLU 82	GLU 285
O	PHE 45	LEU 216
P	ASP 40	TYR 219
Q	GLY 56	THR 215
R	ALA 41	PHE 229
S	ASN 65	ILE 237
g	PRO 83	GLU 285

There are278 helices in PDB entry 9L5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	30	55	Right-handed alpha
Helix 3	AA3	A	95	99	Right-handed 310
Helix 4	AA4	A	101	108	Right-handed alpha
Helix 5	AA5	A	109	138	Right-handed alpha
Helix 6	AA6	A	142	159	Right-handed alpha
Helix 7	AA7	A	159	166	Right-handed alpha
Helix 8	AA8	A	167	171	Right-handed 310
Helix 9	AA9	A	176	191	Right-handed alpha
Helix 10	AB1	A	192	194	Right-handed 310
Helix 11	AB2	A	195	222	Right-handed alpha
Helix 12	AB3	A	232	237	Right-handed 310
Helix 13	AB4	A	253	259	Right-handed alpha
Helix 14	AB5	A	267	295	Right-handed alpha
Helix 15	AB6	A	316	333	Right-handed alpha
Helix 16	AB7	B	4	13	Right-handed 310
Helix 17	AB8	B	15	45	Right-handed alpha
Helix 18	AB9	B	54	58	Right-handed 310
Helix 19	AC1	B	61	69	Right-handed alpha
Helix 20	AC2	B	92	117	Right-handed alpha
Helix 21	AC3	B	134	157	Right-handed alpha
Helix 22	AC4	B	186	190	Right-handed 310
Helix 23	AC5	B	194	219	Right-handed alpha
Helix 24	AC6	B	222	229	Right-handed alpha
Helix 25	AC7	B	233	259	Right-handed alpha
Helix 26	AC8	B	264	269	Right-handed alpha
Helix 27	AC9	B	271	277	Right-handed alpha
Helix 28	AD1	B	278	294	Right-handed alpha
Helix 29	AD2	B	297	304	Right-handed alpha
Helix 30	AD3	B	306	313	Right-handed alpha
Helix 31	AD4	B	314	322	Right-handed 310
Helix 32	AD5	B	329	335	Right-handed alpha
Helix 33	AD6	B	391	396	Right-handed alpha
Helix 34	AD7	B	413	425	Right-handed alpha
Helix 35	AD8	B	446	475	Right-handed alpha
Helix 36	AD9	B	476	479	Right-handed 310
Helix 37	AE1	C	41	46	Right-handed alpha
Helix 38	AE2	C	48	57	Right-handed 310
Helix 39	AE3	C	59	88	Right-handed alpha
Helix 40	AE4	C	94	98	Right-handed 310
Helix 41	AE5	C	101	109	Right-handed alpha
Helix 42	AE6	C	114	118	Right-handed 310
Helix 43	AE7	C	122	148	Right-handed alpha
Helix 44	AE8	C	167	195	Right-handed alpha
Helix 45	AE9	C	219	228	Right-handed alpha
Helix 46	AF1	C	236	241	Right-handed 310
Helix 47	AF2	C	243	268	Right-handed alpha
Helix 48	AF3	C	271	276	Right-handed alpha
Helix 49	AF4	C	281	307	Right-handed alpha
Helix 50	AF5	C	312	317	Right-handed alpha
Helix 51	AF6	C	319	337	Right-handed alpha
Helix 52	AF7	C	367	373	Right-handed 310
Helix 53	AF8	C	380	382	Right-handed 310
Helix 54	AF9	C	390	397	Right-handed alpha
Helix 55	AG1	C	399	412	Right-handed alpha
Helix 56	AG2	C	435	468	Right-handed alpha
Helix 57	AG3	C	478	483	Right-handed alpha
Helix 58	AG4	D	12	22	Right-handed alpha
Helix 59	AG5	D	29	53	Right-handed alpha
Helix 60	AG6	D	81	85	Right-handed 310
Helix 61	AG7	D	99	106	Right-handed alpha
Helix 62	AG8	D	107	136	Right-handed alpha
Helix 63	AG9	D	145	157	Right-handed alpha
Helix 64	AH1	D	157	163	Right-handed alpha
Helix 65	AH2	D	165	169	Right-handed 310
Helix 66	AH3	D	174	189	Right-handed alpha
Helix 67	AH4	D	190	192	Right-handed 310
Helix 68	AH5	D	193	219	Right-handed alpha
Helix 69	AH6	D	244	256	Right-handed alpha
Helix 70	AH7	D	262	290	Right-handed alpha
Helix 71	AH8	D	297	306	Right-handed alpha
Helix 72	AH9	D	312	333	Right-handed alpha
Helix 73	AI1	D	334	337	Right-handed 310
Helix 74	AI2	E	21	42	Right-handed alpha
Helix 75	AI3	E	42	49	Right-handed alpha
Helix 76	AI4	E	72	81	Right-handed alpha
Helix 77	AI5	F	15	39	Right-handed alpha
Helix 78	AI6	H	5	12	Right-handed alpha
Helix 79	AI7	H	13	16	Right-handed 310
Helix 80	AI8	H	27	50	Right-handed alpha
Helix 81	AI9	H	61	66	Right-handed 310
Helix 82	AJ1	I	2	24	Right-handed alpha
Helix 83	AJ2	I	26	30	Right-handed 310
Helix 84	AJ3	K	14	16	Right-handed 310
Helix 85	AJ4	K	17	22	Right-handed alpha
Helix 86	AJ5	K	23	25	Right-handed 310
Helix 87	AJ6	K	26	42	Right-handed alpha
Helix 88	AJ7	L	14	38	Right-handed alpha
Helix 89	AJ8	M	4	37	Right-handed alpha
Helix 90	AJ9	T	2	23	Right-handed alpha
Helix 91	AK1	W	35	39	Right-handed 310
Helix 92	AK2	W	40	60	Right-handed alpha
Helix 93	AK3	X	2	19	Right-handed alpha
Helix 94	AK4	X	19	34	Right-handed alpha
Helix 95	AK5	Y	8	31	Right-handed alpha
Helix 96	AK6	Z	2	29	Right-handed alpha
Helix 97	AK7	Z	36	60	Right-handed alpha
Helix 98	AK8	a	12	22	Right-handed alpha
Helix 99	AK9	a	30	55	Right-handed alpha
Helix 100	AL1	a	95	99	Right-handed 310
Helix 101	AL2	a	101	108	Right-handed alpha
Helix 102	AL3	a	109	138	Right-handed alpha
Helix 103	AL4	a	142	159	Right-handed alpha
Helix 104	AL5	a	159	166	Right-handed alpha
Helix 105	AL6	a	167	171	Right-handed 310
Helix 106	AL7	a	176	191	Right-handed alpha
Helix 107	AL8	a	192	194	Right-handed 310
Helix 108	AL9	a	195	222	Right-handed alpha
Helix 109	AM1	a	232	237	Right-handed 310
Helix 110	AM2	a	253	259	Right-handed alpha
Helix 111	AM3	a	267	295	Right-handed alpha
Helix 112	AM4	a	316	331	Right-handed alpha
Helix 113	AM5	b	4	13	Right-handed 310
Helix 114	AM6	b	15	45	Right-handed alpha
Helix 115	AM7	b	54	58	Right-handed 310
Helix 116	AM8	b	61	69	Right-handed alpha
Helix 117	AM9	b	92	117	Right-handed alpha
Helix 118	AN1	b	120	124	Right-handed 310
Helix 119	AN2	b	134	156	Right-handed alpha
Helix 120	AN3	b	186	190	Right-handed 310
Helix 121	AN4	b	194	219	Right-handed alpha
Helix 122	AN5	b	222	229	Right-handed alpha
Helix 123	AN6	b	233	259	Right-handed alpha
Helix 124	AN7	b	264	269	Right-handed alpha
Helix 125	AN8	b	271	277	Right-handed alpha
Helix 126	AN9	b	278	295	Right-handed alpha
Helix 127	AO1	b	297	304	Right-handed alpha
Helix 128	AO2	b	306	313	Right-handed alpha
Helix 129	AO3	b	314	322	Right-handed 310
Helix 130	AO4	b	329	335	Right-handed alpha
Helix 131	AO5	b	391	396	Right-handed alpha
Helix 132	AO6	b	413	425	Right-handed alpha
Helix 133	AO7	b	446	475	Right-handed alpha
Helix 134	AO8	b	476	479	Right-handed 310
Helix 135	AO9	c	41	46	Right-handed alpha
Helix 136	AP1	c	48	57	Right-handed 310
Helix 137	AP2	c	59	88	Right-handed alpha
Helix 138	AP3	c	94	98	Right-handed 310
Helix 139	AP4	c	101	109	Right-handed alpha
Helix 140	AP5	c	114	118	Right-handed 310
Helix 141	AP6	c	122	148	Right-handed alpha
Helix 142	AP7	c	167	195	Right-handed alpha
Helix 143	AP8	c	219	228	Right-handed alpha
Helix 144	AP9	c	236	241	Right-handed 310
Helix 145	AQ1	c	243	268	Right-handed alpha
Helix 146	AQ2	c	271	276	Right-handed alpha
Helix 147	AQ3	c	281	307	Right-handed alpha
Helix 148	AQ4	c	312	317	Right-handed alpha
Helix 149	AQ5	c	319	337	Right-handed alpha
Helix 150	AQ6	c	367	373	Right-handed 310
Helix 151	AQ7	c	380	384	Right-handed 310
Helix 152	AQ8	c	390	397	Right-handed alpha
Helix 153	AQ9	c	399	412	Right-handed alpha
Helix 154	AR1	c	435	468	Right-handed alpha
Helix 155	AR2	c	478	483	Right-handed alpha
Helix 156	AR3	d	12	22	Right-handed alpha
Helix 157	AR4	d	29	53	Right-handed alpha
Helix 158	AR5	d	99	106	Right-handed alpha
Helix 159	AR6	d	107	136	Right-handed alpha
Helix 160	AR7	d	145	157	Right-handed alpha
Helix 161	AR8	d	157	163	Right-handed alpha
Helix 162	AR9	d	165	169	Right-handed 310
Helix 163	AS1	d	174	189	Right-handed alpha
Helix 164	AS2	d	190	192	Right-handed 310
Helix 165	AS3	d	193	219	Right-handed alpha
Helix 166	AS4	d	244	256	Right-handed alpha
Helix 167	AS5	d	262	290	Right-handed alpha
Helix 168	AS6	d	297	306	Right-handed alpha
Helix 169	AS7	d	312	333	Right-handed alpha
Helix 170	AS8	d	334	337	Right-handed 310
Helix 171	AS9	e	21	41	Right-handed alpha
Helix 172	AT1	e	42	49	Right-handed alpha
Helix 173	AT2	e	72	81	Right-handed alpha
Helix 174	AT3	f	14	23	Right-handed alpha
Helix 175	AT4	f	24	39	Right-handed alpha
Helix 176	AT5	h	5	11	Right-handed alpha
Helix 177	AT6	h	12	16	Right-handed 310
Helix 178	AT7	h	27	50	Right-handed alpha
Helix 179	AT8	h	61	66	Right-handed 310
Helix 180	AT9	i	2	24	Right-handed alpha
Helix 181	AU1	i	26	30	Right-handed 310
Helix 182	AU2	k	12	16	Right-handed 310
Helix 183	AU3	k	17	22	Right-handed alpha
Helix 184	AU4	k	23	25	Right-handed 310
Helix 185	AU5	k	26	42	Right-handed alpha
Helix 186	AU6	l	14	38	Right-handed alpha
Helix 187	AU7	m	5	37	Right-handed alpha
Helix 188	AU8	t	2	23	Right-handed alpha
Helix 189	AU9	w	29	33	Right-handed 310
Helix 190	AV1	w	35	37	Right-handed 310
Helix 191	AV2	w	38	59	Right-handed alpha
Helix 192	AV3	x	2	19	Right-handed alpha
Helix 193	AV4	x	19	34	Right-handed alpha
Helix 194	AV5	y	8	31	Right-handed alpha
Helix 195	AV6	z	2	29	Right-handed alpha
Helix 196	AV7	z	36	60	Right-handed alpha
Helix 197	AV8	1	77	82	Right-handed alpha
Helix 198	AV9	1	83	109	Right-handed alpha
Helix 199	AW1	1	124	136	Right-handed alpha
Helix 200	AW2	1	136	152	Right-handed alpha
Helix 201	AW3	1	152	163	Right-handed alpha
Helix 202	AW4	1	181	213	Right-handed alpha
Helix 203	AW5	1	215	223	Right-handed alpha
Helix 204	AW6	N	77	82	Right-handed alpha
Helix 205	AW7	N	83	110	Right-handed alpha
Helix 206	AW8	N	124	136	Right-handed alpha
Helix 207	AW9	N	137	141	Right-handed 310
Helix 208	AX1	N	142	152	Right-handed alpha
Helix 209	AX2	N	152	163	Right-handed alpha
Helix 210	AX3	N	181	213	Right-handed alpha
Helix 211	AX4	N	215	223	Right-handed alpha
Helix 212	AX5	2	74	79	Right-handed alpha
Helix 213	AX6	2	80	108	Right-handed alpha
Helix 214	AX7	2	119	129	Right-handed alpha
Helix 215	AX8	2	129	154	Right-handed alpha
Helix 216	AX9	2	172	205	Right-handed alpha
Helix 217	AY1	2	207	214	Right-handed alpha
Helix 218	AY2	3	68	73	Right-handed 310
Helix 219	AY3	3	74	102	Right-handed alpha
Helix 220	AY4	3	113	121	Right-handed alpha
Helix 221	AY5	3	122	142	Right-handed alpha
Helix 222	AY6	3	170	203	Right-handed alpha
Helix 223	AY7	3	205	211	Right-handed alpha
Helix 224	AY8	4	71	76	Right-handed alpha
Helix 225	AY9	4	77	105	Right-handed alpha
Helix 226	AZ1	4	109	115	Right-handed alpha
Helix 227	AZ2	4	118	130	Right-handed alpha
Helix 228	AZ3	4	130	155	Right-handed alpha
Helix 229	AZ4	4	174	207	Right-handed alpha
Helix 230	AZ5	4	209	215	Right-handed alpha
Helix 231	AZ6	5	80	108	Right-handed alpha
Helix 232	AZ7	5	117	129	Right-handed alpha
Helix 233	AZ8	5	129	154	Right-handed alpha
Helix 234	AZ9	5	176	207	Right-handed alpha
Helix 235	BA1	5	209	216	Right-handed alpha
Helix 236	BA2	6	90	95	Right-handed alpha
Helix 237	BA3	6	96	124	Right-handed alpha
Helix 238	BA4	6	134	142	Right-handed alpha
Helix 239	BA5	6	143	163	Right-handed alpha
Helix 240	BA6	6	191	224	Right-handed alpha
Helix 241	BA7	6	226	233	Right-handed alpha
Helix 242	BA8	G	84	87	Right-handed 310
Helix 243	BA9	G	88	116	Right-handed alpha
Helix 244	BB1	G	149	163	Right-handed alpha
Helix 245	BB2	O	72	77	Right-handed alpha
Helix 246	BB3	O	78	106	Right-handed alpha
Helix 247	BB4	O	117	127	Right-handed alpha
Helix 248	BB5	O	127	152	Right-handed alpha
Helix 249	BB6	O	170	203	Right-handed alpha
Helix 250	BB7	O	205	212	Right-handed alpha
Helix 251	BB8	P	68	73	Right-handed 310
Helix 252	BB9	P	74	102	Right-handed alpha
Helix 253	BC1	P	113	121	Right-handed alpha
Helix 254	BC2	P	122	142	Right-handed alpha
Helix 255	BC3	P	170	203	Right-handed alpha
Helix 256	BC4	P	205	211	Right-handed alpha
Helix 257	BC5	Q	71	76	Right-handed alpha
Helix 258	BC6	Q	77	105	Right-handed alpha
Helix 259	BC7	Q	109	115	Right-handed alpha
Helix 260	BC8	Q	118	130	Right-handed alpha
Helix 261	BC9	Q	130	155	Right-handed alpha
Helix 262	BD1	Q	174	207	Right-handed alpha
Helix 263	BD2	Q	209	215	Right-handed alpha
Helix 264	BD3	R	80	108	Right-handed alpha
Helix 265	BD4	R	117	129	Right-handed alpha
Helix 266	BD5	R	129	154	Right-handed alpha
Helix 267	BD6	R	176	207	Right-handed alpha
Helix 268	BD7	R	209	216	Right-handed alpha
Helix 269	BD8	S	90	95	Right-handed alpha
Helix 270	BD9	S	96	124	Right-handed alpha
Helix 271	BE1	S	134	142	Right-handed alpha
Helix 272	BE2	S	143	163	Right-handed alpha
Helix 273	BE3	S	191	224	Right-handed alpha
Helix 274	BE4	S	226	233	Right-handed alpha
Helix 275	BE5	g	84	87	Right-handed 310
Helix 276	BE6	g	88	115	Right-handed alpha
Helix 277	BE7	g	149	163	Right-handed alpha
Helix 278	BE8	g	166	170	Right-handed 310

There are 17 sheets in PDB entry 9L5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	174	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	313	314	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	177	179	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	398	402	anti-parallel
Strand 6	B	410	411	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	336	347	anti-parallel
Strand 5	B	429	433	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	209	211	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	357	first strand
Strand 2	C	363	365	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	385	first strand
Strand 2	C	388	389	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	172	173	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	81	82	first strand
Strand 2	a	174	175	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	306	307	first strand
Strand 2	a	313	314	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	166	168	first strand
Strand 2	b	177	179	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	336	340	first strand
Strand 2	b	430	433	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	377	380	first strand
Strand 2	b	369	371	anti-parallel
Strand 3	b	353	356	anti-parallel
Strand 4	b	343	347	anti-parallel
Strand 5	b	398	402	anti-parallel
Strand 6	b	410	411	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	199	201	first strand
Strand 2	c	209	211	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	355	357	first strand
Strand 2	c	363	365	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	76	77	first strand
Strand 2	d	172	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L5V