Analysis of interatomic Contacts of Structural Units in PDB entry:
9L5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L5Y entry

There are 4 chains in PDB entry 9L5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25PRO 492
B
 SER 25PRO 492
D
 A 7 U 56
F
 G 8 C 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9L5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 36Right-handed alpha
Helix 2
AA2
A
36 41Right-handed alpha
Helix 3
AA3
A
50 67Right-handed alpha
Helix 4
AA4
A
67 81Right-handed alpha
Helix 5
AA5
A
85 96Right-handed alpha
Helix 6
AA6
A
99 104Right-handed alpha
Helix 7
AA7
A
104 116Right-handed alpha
Helix 8
AA8
A
120 132Right-handed alpha
Helix 9
AA9
A
137 151Right-handed alpha
Helix 10
AB1
A
152 159Right-handed alpha
Helix 11
AB2
A
167 176Right-handed alpha
Helix 12
AB3
A
181 194Right-handed alpha
Helix 13
AB4
A
195 197Right-handed 310
Helix 14
AB5
A
198 211Right-handed alpha
Helix 15
AB6
A
214 223Right-handed alpha
Helix 16
AB7
A
225 233Right-handed alpha
Helix 17
AB8
A
238 251Right-handed alpha
Helix 18
AB9
A
252 255Right-handed 310
Helix 19
AC1
A
256 269Right-handed alpha
Helix 20
AC2
A
270 273Right-handed 310
Helix 21
AC3
A
276 291Right-handed alpha
Helix 22
AC4
A
293 306Right-handed alpha
Helix 23
AC5
A
338 355Right-handed alpha
Helix 24
AC6
A
369 372Right-handed 310
Helix 25
AC7
A
375 387Right-handed alpha
Helix 26
AC8
A
392 401Right-handed alpha
Helix 27
AC9
A
425 433Right-handed alpha
Helix 28
AD1
A
466 475Right-handed alpha
Helix 29
AD2
A
480 489Right-handed alpha
Helix 30
AD3
B
26 35Right-handed alpha
Helix 31
AD4
B
36 39Right-handed 310
Helix 32
AD5
B
50 67Right-handed alpha
Helix 33
AD6
B
67 79Right-handed alpha
Helix 34
AD7
B
89 96Right-handed alpha
Helix 35
AD8
B
99 104Right-handed alpha
Helix 36
AD9
B
104 116Right-handed alpha
Helix 37
AE1
B
120 133Right-handed alpha
Helix 38
AE2
B
137 150Right-handed alpha
Helix 39
AE3
B
152 159Right-handed alpha
Helix 40
AE4
B
167 176Right-handed alpha
Helix 41
AE5
B
181 194Right-handed alpha
Helix 42
AE6
B
195 197Right-handed 310
Helix 43
AE7
B
198 209Right-handed alpha
Helix 44
AE8
B
214 223Right-handed alpha
Helix 45
AE9
B
225 236Right-handed alpha
Helix 46
AF1
B
238 251Right-handed alpha
Helix 47
AF2
B
252 255Right-handed 310
Helix 48
AF3
B
256 268Right-handed alpha
Helix 49
AF4
B
276 290Right-handed alpha
Helix 50
AF5
B
293 304Right-handed alpha
Helix 51
AF6
B
324 328Right-handed 310
Helix 52
AF7
B
338 355Right-handed alpha
Helix 53
AF8
B
369 371Right-handed 310
Helix 54
AF9
B
375 387Right-handed alpha
Helix 55
AG1
B
392 401Right-handed alpha
Helix 56
AG2
B
425 433Right-handed alpha
Helix 57
AG3
B
466 477Right-handed alpha
Helix 58
AG4
B
480 489Right-handed alpha
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There are 3 sheets in PDB entry 9L5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
357 361anti-parallel
Strand 3
A
317 322parallel
Strand 4
A
410 415parallel
Strand 5
A
438 443parallel
Strand 6
A
457 459parallel
Strand 7
A
451 454anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 367first strand
Strand 2
B
357 361anti-parallel
Strand 3
B
317 322parallel
Strand 4
B
410 412parallel
Strand 5
B
438 439parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 415first strand
Strand 2
B
442 443parallel
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