Analysis of interatomic Contacts of Structural Units in PDB entry:
9L62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L62 entry

There are 2 chains in PDB entry 9L62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 108LYS 575
B
 LEU 108LYS 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9L62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
109 136Right-handed alpha
Helix 2
AA2
A
144 171Right-handed alpha
Helix 3
AA3
A
172 174Right-handed 310
Helix 4
AA4
A
175 200Right-handed alpha
Helix 5
AA5
A
219 238Right-handed alpha
Helix 6
AA6
A
310 320Right-handed alpha
Helix 7
AA7
A
322 336Right-handed alpha
Helix 8
AA8
A
339 352Right-handed alpha
Helix 9
AA9
A
378 395Right-handed alpha
Helix 10
AB1
A
410 421Right-handed alpha
Helix 11
AB2
A
447 459Right-handed alpha
Helix 12
AB3
A
469 480Right-handed alpha
Helix 13
AB4
B
109 139Right-handed alpha
Helix 14
AB5
B
142 173Right-handed alpha
Helix 15
AB6
B
175 199Right-handed alpha
Helix 16
AB7
B
219 238Right-handed alpha
Helix 17
AB8
B
254 258Right-handed 310
Helix 18
AB9
B
312 320Right-handed alpha
Helix 19
AC1
B
322 336Right-handed alpha
Helix 20
AC2
B
339 354Right-handed alpha
Helix 21
AC3
B
378 395Right-handed alpha
Helix 22
AC4
B
410 421Right-handed alpha
Helix 23
AC5
B
432 437Right-handed 310
Helix 24
AC6
B
446 460Right-handed alpha
Helix 25
AC7
B
469 481Right-handed alpha
Helix 26
AC8
B
570 575Right-handed 310
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There are 9 sheets in PDB entry 9L62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
209 213parallel
Strand 3
A
288 290parallel
Strand 4
A
274 276parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
564 565parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
402 407parallel
Strand 3
A
359 363parallel
Strand 4
A
462 465parallel
Strand 5
A
491 492parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 550first strand
Strand 2
A
539 544anti-parallel
Strand 3
A
553 554anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 550first strand
Strand 2
A
539 544anti-parallel
Strand 3
A
528 534anti-parallel
Strand 4
A
506 509anti-parallel
Strand 5
A
558 560anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 244first strand
Strand 2
B
209 213parallel
Strand 3
B
288 290parallel
Strand 4
B
274 275parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
564 565parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 427first strand
Strand 2
B
402 408parallel
Strand 3
B
359 364parallel
Strand 4
B
463 465parallel
Strand 5
B
490 492parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 554first strand
Strand 2
B
539 544anti-parallel
Strand 3
B
528 534anti-parallel
Strand 4
B
506 509anti-parallel
Strand 5
B
558 560anti-parallel
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