Analysis of interatomic Contacts of Structural Units in PDB entry:
9L6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L6D entry

There are 3 chains in PDB entry 9L6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LYS 147
B
 MET 0LYS 147
C
 MET 0LYS 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 9L6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 45Right-handed alpha
Helix 2
AA2
A
55 67Right-handed alpha
Helix 3
AA3
A
68 71Right-handed 310
Helix 4
AA4
A
100 102Right-handed 310
Helix 5
AA5
A
127 132Right-handed 310
Helix 6
AA6
A
135 139Right-handed 310
Helix 7
AA7
B
40 45Right-handed alpha
Helix 8
AA8
B
55 67Right-handed alpha
Helix 9
AA9
B
68 71Right-handed 310
Helix 10
AB1
B
100 102Right-handed 310
Helix 11
AB2
B
135 139Right-handed 310
Helix 12
AB3
C
40 45Right-handed alpha
Helix 13
AB4
C
55 67Right-handed alpha
Helix 14
AB5
C
68 71Right-handed 310
Helix 15
AB6
C
100 102Right-handed 310
Helix 16
AB7
C
127 132Right-handed 310
Helix 17
AB8
C
135 139Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 9L6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
28 34parallel
Strand 3
A
92 98anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
141 147parallel
Strand 3
A
108 111anti-parallel
Strand 4
A
49 52anti-parallel
Strand 5
A
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
28 34parallel
Strand 3
B
92 98anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
141 147parallel
Strand 3
B
108 111anti-parallel
Strand 4
B
49 52anti-parallel
Strand 5
B
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 8first strand
Strand 2
C
28 34parallel
Strand 3
C
92 98anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 23first strand
Strand 2
C
141 147parallel
Strand 3
C
108 111anti-parallel
Strand 4
C
49 52anti-parallel
Strand 5
C
82 83anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il