Analysis of interatomic Contacts of Structural Units in PDB entry:
9L7D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L7D entry

There are 8 chains in PDB entry 9L7D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	MET 4	VAL 347
A	MET 3	PRO 327
B	ASP 26	ARG 1000
C	MET 1	TRP 341
I	ASN 4	ALA 339
G	ILE 3	GLU 154
E	MET 4	LEU 348
V	U 10	C 31

There are109 helices in PDB entry 9L7D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	46	65	Right-handed alpha
Helix 2	AA2	F	75	84	Right-handed alpha
Helix 3	AA3	F	87	97	Right-handed alpha
Helix 4	AA4	F	102	109	Right-handed alpha
Helix 5	AA5	F	147	159	Right-handed alpha
Helix 6	AA6	F	169	175	Right-handed alpha
Helix 7	AA7	F	214	228	Right-handed alpha
Helix 8	AA8	F	236	241	Right-handed alpha
Helix 9	AA9	F	247	258	Right-handed alpha
Helix 10	AB1	F	306	310	Right-handed 310
Helix 11	AB2	F	311	324	Right-handed alpha
Helix 12	AB3	F	333	337	Right-handed 310
Helix 13	AB4	A	29	50	Right-handed alpha
Helix 14	AB5	A	52	65	Right-handed alpha
Helix 15	AB6	A	122	140	Right-handed alpha
Helix 16	AB7	A	145	149	Right-handed 310
Helix 17	AB8	A	170	193	Right-handed alpha
Helix 18	AB9	A	221	225	Right-handed 310
Helix 19	AC1	A	238	249	Right-handed alpha
Helix 20	AC2	A	257	261	Right-handed 310
Helix 21	AC3	A	310	321	Right-handed alpha
Helix 22	AC4	B	27	38	Right-handed alpha
Helix 23	AC5	B	43	47	Right-handed 310
Helix 24	AC6	B	50	60	Right-handed alpha
Helix 25	AC7	B	61	63	Right-handed 310
Helix 26	AC8	B	65	78	Right-handed alpha
Helix 27	AC9	B	81	89	Right-handed alpha
Helix 28	AD1	B	128	135	Right-handed alpha
Helix 29	AD2	B	149	179	Right-handed alpha
Helix 30	AD3	B	181	205	Right-handed alpha
Helix 31	AD4	B	206	215	Right-handed alpha
Helix 32	AD5	B	226	241	Right-handed alpha
Helix 33	AD6	B	257	263	Right-handed alpha
Helix 34	AD7	B	266	292	Right-handed alpha
Helix 35	AD8	B	305	315	Right-handed alpha
Helix 36	AD9	B	343	373	Right-handed alpha
Helix 37	AE1	B	373	378	Right-handed alpha
Helix 38	AE2	B	381	388	Right-handed alpha
Helix 39	AE3	B	390	400	Right-handed alpha
Helix 40	AE4	B	419	435	Right-handed alpha
Helix 41	AE5	B	437	452	Right-handed alpha
Helix 42	AE6	B	466	482	Right-handed alpha
Helix 43	AE7	B	509	524	Right-handed alpha
Helix 44	AE8	B	535	544	Right-handed alpha
Helix 45	AE9	B	544	549	Right-handed alpha
Helix 46	AF1	B	566	572	Right-handed alpha
Helix 47	AF2	B	581	590	Right-handed alpha
Helix 48	AF3	B	600	626	Right-handed alpha
Helix 49	AF4	B	629	636	Right-handed alpha
Helix 50	AF5	B	641	651	Right-handed 310
Helix 51	AF6	B	652	661	Right-handed alpha
Helix 52	AF7	B	663	668	Right-handed alpha
Helix 53	AF8	B	669	672	Right-handed 310
Helix 54	AF9	B	676	693	Right-handed alpha
Helix 55	AG1	B	709	715	Right-handed alpha
Helix 56	AG2	B	721	726	Right-handed 310
Helix 57	AG3	B	735	744	Right-handed alpha
Helix 58	AG4	B	750	768	Right-handed alpha
Helix 59	AG5	B	768	776	Right-handed alpha
Helix 60	AG6	B	796	810	Right-handed alpha
Helix 61	AG7	B	835	853	Right-handed alpha
Helix 62	AG8	B	876	891	Right-handed alpha
Helix 63	AG9	B	896	906	Right-handed alpha
Helix 64	AH1	B	913	926	Right-handed alpha
Helix 65	AH2	B	928	943	Right-handed alpha
Helix 66	AH3	B	955	964	Right-handed alpha
Helix 67	AH4	B	966	974	Right-handed alpha
Helix 68	AH5	B	976	1000	Right-handed alpha
Helix 69	AH6	C	32	42	Right-handed alpha
Helix 70	AH7	C	126	133	Right-handed alpha
Helix 71	AH8	C	138	140	Right-handed 310
Helix 72	AH9	C	144	147	Right-handed 310
Helix 73	AI1	C	217	238	Right-handed alpha
Helix 74	AI2	C	260	267	Right-handed alpha
Helix 75	AI3	C	328	332	Right-handed 310
Helix 76	AI4	I	15	24	Right-handed alpha
Helix 77	AI5	I	31	38	Right-handed alpha
Helix 78	AI6	I	53	58	Right-handed alpha
Helix 79	AI7	I	59	61	Right-handed 310
Helix 80	AI8	I	63	77	Right-handed alpha
Helix 81	AI9	I	78	96	Right-handed alpha
Helix 82	AJ1	I	135	163	Right-handed alpha
Helix 83	AJ2	I	163	178	Right-handed alpha
Helix 84	AJ3	I	188	202	Right-handed alpha
Helix 85	AJ4	I	204	212	Right-handed 310
Helix 86	AJ5	I	224	232	Right-handed alpha
Helix 87	AJ6	I	250	255	Right-handed alpha
Helix 88	AJ7	I	267	273	Right-handed alpha
Helix 89	AJ8	I	306	324	Right-handed alpha
Helix 90	AJ9	I	329	333	Right-handed 310
Helix 91	AK1	G	5	25	Right-handed alpha
Helix 92	AK2	G	28	50	Right-handed alpha
Helix 93	AK3	G	50	62	Right-handed alpha
Helix 94	AK4	G	70	74	Right-handed 310
Helix 95	AK5	G	75	79	Right-handed 310
Helix 96	AK6	G	81	101	Right-handed alpha
Helix 97	AK7	G	116	123	Right-handed alpha
Helix 98	AK8	G	125	150	Right-handed alpha
Helix 99	AK9	E	46	64	Right-handed alpha
Helix 100	AL1	E	75	84	Right-handed alpha
Helix 101	AL2	E	87	97	Right-handed alpha
Helix 102	AL3	E	102	109	Right-handed alpha
Helix 103	AL4	E	147	166	Right-handed alpha
Helix 104	AL5	E	167	171	Right-handed 310
Helix 105	AL6	E	213	228	Right-handed alpha
Helix 106	AL7	E	235	240	Right-handed 310
Helix 107	AL8	E	247	258	Right-handed alpha
Helix 108	AL9	E	306	310	Right-handed 310
Helix 109	AM1	E	311	323	Right-handed alpha

There are 27 sheets in PDB entry 9L7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	45	first strand
Strand 2	F	128	136	anti-parallel
Strand 3	F	290	297	anti-parallel
Strand 4	F	142	146	first strand
Strand 5	F	243	245	parallel
Strand 6	F	185	188	anti-parallel
Strand 7	F	205	209	parallel
Strand 8	F	199	202	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	125	first strand
Strand 2	F	290	297	anti-parallel
Strand 3	F	128	136	anti-parallel
Strand 4	F	7	15	first strand
Strand 5	F	340	345	anti-parallel
Strand 6	F	326	329	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	231	first strand
Strand 2	F	234	235	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	264	first strand
Strand 2	F	280	284	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	81	first strand
Strand 2	A	111	120	anti-parallel
Strand 3	A	5	12	anti-parallel
Strand 4	A	153	160	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	93	first strand
Strand 2	A	102	108	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	286	first strand
Strand 2	A	289	297	anti-parallel
Strand 3	A	211	219	anti-parallel
Strand 4	A	323	326	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	125	126	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	299	first strand
Strand 2	B	334	341	anti-parallel
Strand 3	B	246	255	anti-parallel
Strand 4	B	403	410	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	C	255	256	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	784	first strand
Strand 2	B	787	793	anti-parallel
Strand 3	B	699	707	anti-parallel
Strand 4	B	823	831	anti-parallel
Strand 5	B	857	863	parallel
Strand 6	B	872	875	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	812	813	first strand
Strand 2	B	816	817	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	123	125	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	67	75	anti-parallel
Strand 5	C	182	188	anti-parallel
Strand 6	C	2	7	anti-parallel
Strand 7	C	209	214	anti-parallel
Strand 8	C	198	200	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	101	first strand
Strand 2	C	106	110	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	154	first strand
Strand 2	C	173	178	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	278	first strand
Strand 2	C	307	314	anti-parallel
Strand 3	C	240	244	anti-parallel
Strand 4	C	335	339	anti-parallel
Strand 5	C	322	324	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	299	301	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	289	first strand
Strand 2	C	294	295	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	8	first strand
Strand 2	I	42	44	anti-parallel
Strand 3	I	50	51	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	240	242	first strand
Strand 2	I	296	303	anti-parallel
Strand 3	I	246	247	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	240	242	first strand
Strand 2	I	296	303	anti-parallel
Strand 3	I	99	105	anti-parallel
Strand 4	I	337	338	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	214	217	first strand
Strand 2	I	220	223	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	259	263	first strand
Strand 2	I	286	290	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	124	first strand
Strand 2	E	290	297	anti-parallel
Strand 3	E	129	136	anti-parallel
Strand 4	E	142	146	anti-parallel
Strand 5	E	243	245	parallel
Strand 6	E	185	188	anti-parallel
Strand 7	E	206	209	parallel
Strand 8	E	199	201	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	124	first strand
Strand 2	E	290	297	anti-parallel
Strand 3	E	7	15	anti-parallel
Strand 4	E	340	346	anti-parallel
Strand 5	E	326	329	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	E	72	73	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	267	first strand
Strand 2	E	274	284	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L7D

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L7D