Analysis of interatomic Contacts of Structural Units in PDB entry:
9L7M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L7M entry

There are 5 chains in PDB entry 9L7M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 439
B	MET 1	GLN 436
C	MET 1	SER 439
D	MET 1	GLN 436
K	CYS 7	THR 324

There are 95 helices in PDB entry 9L7M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	28	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	74	81	Right-handed alpha
Helix 4	AA4	A	103	108	Right-handed alpha
Helix 5	AA5	A	114	124	Right-handed alpha
Helix 6	AA6	A	144	160	Right-handed alpha
Helix 7	AA7	A	182	190	Right-handed alpha
Helix 8	AA8	A	192	197	Right-handed alpha
Helix 9	AA9	A	206	215	Right-handed alpha
Helix 10	AB1	A	223	234	Right-handed alpha
Helix 11	AB2	A	234	239	Right-handed alpha
Helix 12	AB3	A	253	260	Right-handed alpha
Helix 13	AB4	A	287	292	Right-handed alpha
Helix 14	AB5	A	293	297	Right-handed 310
Helix 15	AB6	A	326	338	Right-handed alpha
Helix 16	AB7	A	382	386	Right-handed 310
Helix 17	AB8	A	387	393	Right-handed alpha
Helix 18	AB9	A	404	410	Right-handed alpha
Helix 19	AC1	A	415	435	Right-handed alpha
Helix 20	AC2	B	10	28	Right-handed alpha
Helix 21	AC3	B	42	51	Right-handed 310
Helix 22	AC4	B	73	81	Right-handed alpha
Helix 23	AC5	B	103	108	Right-handed alpha
Helix 24	AC6	B	115	123	Right-handed alpha
Helix 25	AC7	B	144	158	Right-handed alpha
Helix 26	AC8	B	174	178	Right-handed 310
Helix 27	AC9	B	182	195	Right-handed alpha
Helix 28	AD1	B	206	215	Right-handed alpha
Helix 29	AD2	B	223	226	Right-handed 310
Helix 30	AD3	B	227	239	Right-handed alpha
Helix 31	AD4	B	251	259	Right-handed alpha
Helix 32	AD5	B	280	284	Right-handed 310
Helix 33	AD6	B	287	295	Right-handed alpha
Helix 34	AD7	B	297	301	Right-handed 310
Helix 35	AD8	B	306	310	Right-handed 310
Helix 36	AD9	B	324	338	Right-handed alpha
Helix 37	AE1	B	383	385	Right-handed 310
Helix 38	AE2	B	386	397	Right-handed alpha
Helix 39	AE3	B	398	402	Right-handed 310
Helix 40	AE4	B	405	410	Right-handed alpha
Helix 41	AE5	B	415	424	Right-handed alpha
Helix 42	AE6	B	426	434	Right-handed alpha
Helix 43	AE7	C	10	28	Right-handed alpha
Helix 44	AE8	C	49	53	Right-handed 310
Helix 45	AE9	C	74	81	Right-handed alpha
Helix 46	AF1	C	103	108	Right-handed alpha
Helix 47	AF2	C	114	124	Right-handed alpha
Helix 48	AF3	C	144	160	Right-handed alpha
Helix 49	AF4	C	182	190	Right-handed alpha
Helix 50	AF5	C	192	197	Right-handed alpha
Helix 51	AF6	C	206	215	Right-handed alpha
Helix 52	AF7	C	223	234	Right-handed alpha
Helix 53	AF8	C	234	239	Right-handed alpha
Helix 54	AF9	C	253	260	Right-handed alpha
Helix 55	AG1	C	287	292	Right-handed alpha
Helix 56	AG2	C	293	297	Right-handed 310
Helix 57	AG3	C	326	338	Right-handed alpha
Helix 58	AG4	C	382	386	Right-handed 310
Helix 59	AG5	C	387	393	Right-handed alpha
Helix 60	AG6	C	404	410	Right-handed alpha
Helix 61	AG7	C	415	435	Right-handed alpha
Helix 62	AG8	D	10	28	Right-handed alpha
Helix 63	AG9	D	42	51	Right-handed 310
Helix 64	AH1	D	73	81	Right-handed alpha
Helix 65	AH2	D	103	108	Right-handed alpha
Helix 66	AH3	D	115	123	Right-handed alpha
Helix 67	AH4	D	144	158	Right-handed alpha
Helix 68	AH5	D	174	178	Right-handed 310
Helix 69	AH6	D	182	195	Right-handed alpha
Helix 70	AH7	D	206	215	Right-handed alpha
Helix 71	AH8	D	223	226	Right-handed 310
Helix 72	AH9	D	227	239	Right-handed alpha
Helix 73	AI1	D	251	259	Right-handed alpha
Helix 74	AI2	D	280	284	Right-handed 310
Helix 75	AI3	D	287	295	Right-handed alpha
Helix 76	AI4	D	297	301	Right-handed 310
Helix 77	AI5	D	306	310	Right-handed 310
Helix 78	AI6	D	324	338	Right-handed alpha
Helix 79	AI7	D	383	385	Right-handed 310
Helix 80	AI8	D	386	397	Right-handed alpha
Helix 81	AI9	D	398	402	Right-handed 310
Helix 82	AJ1	D	405	410	Right-handed alpha
Helix 83	AJ2	D	415	424	Right-handed alpha
Helix 84	AJ3	D	426	434	Right-handed alpha
Helix 85	AJ4	K	20	26	Right-handed alpha
Helix 86	AJ5	K	57	66	Right-handed alpha
Helix 87	AJ6	K	67	68	Right-handed 310
Helix 88	AJ7	K	70	70	Right-handed 310
Helix 89	AJ8	K	71	75	Right-handed alpha
Helix 90	AJ9	K	90	95	Right-handed alpha
Helix 91	AK1	K	108	121	Right-handed alpha
Helix 92	AK2	K	175	188	Right-handed alpha
Helix 93	AK3	K	245	271	Right-handed alpha
Helix 94	AK4	K	280	287	Right-handed alpha
Helix 95	AK5	K	308	322	Right-handed alpha

There are 22 sheets in PDB entry 9L7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	3	9	parallel
Strand 3	A	132	140	parallel
Strand 4	A	165	167	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	3	9	parallel
Strand 3	A	132	140	parallel
Strand 4	A	169	171	parallel
Strand 5	A	202	204	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	60	61	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	378	379	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	318	first strand
Strand 2	A	353	354	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	373	374	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	4	9	parallel
Strand 4	B	134	140	parallel
Strand 5	B	165	166	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	4	9	parallel
Strand 4	B	134	140	parallel
Strand 5	B	169	172	parallel
Strand 6	B	201	205	parallel
Strand 7	B	267	273	parallel
Strand 8	B	374	381	anti-parallel
Strand 9	B	312	320	anti-parallel
Strand 10	B	351	355	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	60	63	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	3	9	parallel
Strand 3	C	132	140	parallel
Strand 4	C	165	167	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	3	9	parallel
Strand 3	C	132	140	parallel
Strand 4	C	169	171	parallel
Strand 5	C	202	204	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	60	61	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	270	first strand
Strand 2	C	378	379	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	318	first strand
Strand 2	C	353	354	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	321	first strand
Strand 2	C	373	374	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	65	69	parallel
Strand 3	D	4	9	parallel
Strand 4	D	134	140	parallel
Strand 5	D	165	166	parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	65	69	parallel
Strand 3	D	4	9	parallel
Strand 4	D	134	140	parallel
Strand 5	D	169	172	parallel
Strand 6	D	201	205	parallel
Strand 7	D	267	273	parallel
Strand 8	D	374	381	anti-parallel
Strand 9	D	312	320	anti-parallel
Strand 10	D	351	355	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	60	63	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	52	first strand
Strand 2	K	9	15	parallel
Strand 3	K	295	302	parallel
Strand 4	K	79	85	parallel
Strand 5	K	222	231	parallel
Strand 6	K	205	216	anti-parallel
Strand 7	K	126	138	anti-parallel
Strand 8	K	141	144	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	52	first strand
Strand 2	K	9	15	parallel
Strand 3	K	295	302	parallel
Strand 4	K	79	85	parallel
Strand 5	K	222	231	parallel
Strand 6	K	205	216	anti-parallel
Strand 7	K	126	138	anti-parallel
Strand 8	K	171	173	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	33	34	first strand
Strand 2	K	38	41	anti-parallel
Strand 3	K	44	47	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	155	156	first strand
Strand 2	K	164	165	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L7M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L7M