Analysis of interatomic Contacts of Structural Units in PDB entry:
9L7P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L7P entry

There are 11 chains in PDB entry 9L7P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 12	GLU 547
B	THR 2	ARG 545
C	THR 2	PRO 457
D	GLU 6	PRO 457
E	MET 1	GLY 309
F	MET 1	GLY 309
H	MET 1	ALA 216
I	U 27	U 66
J	G 5	C 77
K	U 27	U 66
L	T 68	C 77

There are130 helices in PDB entry 9L7P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	23	Right-handed alpha
Helix 2	AA2	A	37	49	Right-handed alpha
Helix 3	AA3	A	95	119	Right-handed alpha
Helix 4	AA4	A	176	193	Right-handed alpha
Helix 5	AA5	A	204	208	Right-handed 310
Helix 6	AA6	A	224	228	Right-handed 310
Helix 7	AA7	A	238	254	Right-handed alpha
Helix 8	AA8	A	257	271	Right-handed alpha
Helix 9	AA9	A	272	275	Right-handed 310
Helix 10	AB1	A	279	303	Right-handed alpha
Helix 11	AB2	A	304	306	Right-handed 310
Helix 12	AB3	A	310	326	Right-handed alpha
Helix 13	AB4	A	355	357	Right-handed 310
Helix 14	AB5	A	358	379	Right-handed alpha
Helix 15	AB6	A	384	388	Right-handed 310
Helix 16	AB7	A	402	407	Right-handed alpha
Helix 17	AB8	A	408	417	Right-handed alpha
Helix 18	AB9	A	428	433	Right-handed alpha
Helix 19	AC1	A	434	435	Right-handed 310
Helix 20	AC2	A	436	438	Right-handed 310
Helix 21	AC3	A	465	473	Right-handed alpha
Helix 22	AC4	A	483	486	Right-handed 310
Helix 23	AC5	A	487	499	Right-handed alpha
Helix 24	AC6	A	504	519	Right-handed alpha
Helix 25	AC7	A	522	536	Right-handed alpha
Helix 26	AC8	A	536	547	Right-handed alpha
Helix 27	AC9	B	3	10	Right-handed alpha
Helix 28	AD1	B	13	25	Right-handed alpha
Helix 29	AD2	B	37	49	Right-handed alpha
Helix 30	AD3	B	98	119	Right-handed alpha
Helix 31	AD4	B	176	193	Right-handed alpha
Helix 32	AD5	B	204	209	Right-handed 310
Helix 33	AD6	B	224	230	Right-handed 310
Helix 34	AD7	B	238	253	Right-handed alpha
Helix 35	AD8	B	310	326	Right-handed alpha
Helix 36	AD9	B	355	357	Right-handed 310
Helix 37	AE1	B	358	379	Right-handed alpha
Helix 38	AE2	B	384	388	Right-handed 310
Helix 39	AE3	B	402	407	Right-handed alpha
Helix 40	AE4	B	409	417	Right-handed alpha
Helix 41	AE5	B	428	433	Right-handed alpha
Helix 42	AE6	B	434	435	Right-handed 310
Helix 43	AE7	B	436	438	Right-handed 310
Helix 44	AE8	B	465	473	Right-handed alpha
Helix 45	AE9	B	483	486	Right-handed 310
Helix 46	AF1	B	487	499	Right-handed alpha
Helix 47	AF2	B	504	519	Right-handed alpha
Helix 48	AF3	B	522	545	Right-handed alpha
Helix 49	AF4	C	3	10	Right-handed alpha
Helix 50	AF5	C	13	26	Right-handed alpha
Helix 51	AF6	C	38	49	Right-handed alpha
Helix 52	AF7	C	98	119	Right-handed alpha
Helix 53	AF8	C	176	190	Right-handed alpha
Helix 54	AF9	C	204	208	Right-handed 310
Helix 55	AG1	C	224	230	Right-handed 310
Helix 56	AG2	C	238	254	Right-handed alpha
Helix 57	AG3	C	310	326	Right-handed alpha
Helix 58	AG4	C	355	357	Right-handed 310
Helix 59	AG5	C	358	379	Right-handed alpha
Helix 60	AG6	C	384	388	Right-handed 310
Helix 61	AG7	C	402	407	Right-handed alpha
Helix 62	AG8	C	408	417	Right-handed alpha
Helix 63	AG9	C	429	435	Right-handed 310
Helix 64	AH1	D	7	11	Right-handed alpha
Helix 65	AH2	D	13	25	Right-handed alpha
Helix 66	AH3	D	38	48	Right-handed alpha
Helix 67	AH4	D	98	119	Right-handed alpha
Helix 68	AH5	D	177	193	Right-handed alpha
Helix 69	AH6	D	204	208	Right-handed 310
Helix 70	AH7	D	224	230	Right-handed 310
Helix 71	AH8	D	238	255	Right-handed alpha
Helix 72	AH9	D	259	277	Right-handed alpha
Helix 73	AI1	D	278	281	Right-handed 310
Helix 74	AI2	D	282	304	Right-handed alpha
Helix 75	AI3	D	310	326	Right-handed alpha
Helix 76	AI4	D	353	357	Right-handed 310
Helix 77	AI5	D	358	379	Right-handed alpha
Helix 78	AI6	D	384	388	Right-handed 310
Helix 79	AI7	D	402	407	Right-handed alpha
Helix 80	AI8	D	408	417	Right-handed alpha
Helix 81	AI9	D	430	435	Right-handed 310
Helix 82	AJ1	D	436	438	Right-handed 310
Helix 83	AJ2	E	2	12	Right-handed alpha
Helix 84	AJ3	E	14	22	Right-handed alpha
Helix 85	AJ4	E	23	25	Right-handed 310
Helix 86	AJ5	E	50	62	Right-handed alpha
Helix 87	AJ6	E	78	86	Right-handed alpha
Helix 88	AJ7	E	105	116	Right-handed alpha
Helix 89	AJ8	E	124	126	Right-handed 310
Helix 90	AJ9	E	127	136	Right-handed alpha
Helix 91	AK1	E	155	163	Right-handed alpha
Helix 92	AK2	E	164	177	Right-handed alpha
Helix 93	AK3	E	198	200	Right-handed 310
Helix 94	AK4	E	201	215	Right-handed alpha
Helix 95	AK5	E	221	225	Right-handed 310
Helix 96	AK6	E	250	266	Right-handed alpha
Helix 97	AK7	E	270	288	Right-handed alpha
Helix 98	AK8	E	289	299	Right-handed alpha
Helix 99	AK9	E	300	308	Right-handed alpha
Helix 100	AL1	F	2	12	Right-handed alpha
Helix 101	AL2	F	14	22	Right-handed alpha
Helix 102	AL3	F	24	27	Right-handed 310
Helix 103	AL4	F	48	62	Right-handed alpha
Helix 104	AL5	F	78	85	Right-handed alpha
Helix 105	AL6	F	100	104	Right-handed 310
Helix 106	AL7	F	105	115	Right-handed alpha
Helix 107	AL8	F	124	136	Right-handed alpha
Helix 108	AL9	F	155	163	Right-handed alpha
Helix 109	AM1	F	164	177	Right-handed alpha
Helix 110	AM2	F	198	200	Right-handed 310
Helix 111	AM3	F	201	214	Right-handed alpha
Helix 112	AM4	F	221	225	Right-handed 310
Helix 113	AM5	F	250	266	Right-handed alpha
Helix 114	AM6	F	270	288	Right-handed alpha
Helix 115	AM7	F	289	299	Right-handed alpha
Helix 116	AM8	F	300	308	Right-handed alpha
Helix 117	AM9	H	10	15	Right-handed 310
Helix 118	AN1	H	22	26	Right-handed 310
Helix 119	AN2	H	27	30	Right-handed 310
Helix 120	AN3	H	31	40	Right-handed alpha
Helix 121	AN4	H	64	68	Right-handed 310
Helix 122	AN5	H	70	72	Right-handed 310
Helix 123	AN6	H	90	97	Right-handed alpha
Helix 124	AN7	H	102	106	Right-handed 310
Helix 125	AN8	H	113	116	Right-handed 310
Helix 126	AN9	H	133	147	Right-handed alpha
Helix 127	AO1	H	152	165	Right-handed alpha
Helix 128	AO2	H	166	171	Right-handed alpha
Helix 129	AO3	H	183	197	Right-handed alpha
Helix 130	AO4	H	201	210	Right-handed alpha

There are 24 sheets in PDB entry 9L7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	58	60	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	65	72	anti-parallel
Strand 3	A	141	149	anti-parallel
Strand 4	A	157	164	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	203	first strand
Strand 2	A	390	396	parallel
Strand 3	A	421	425	parallel
Strand 4	A	88	92	parallel
Strand 5	A	440	442	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	336	first strand
Strand 2	A	341	347	anti-parallel
Strand 3	A	350	353	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	58	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	83	first strand
Strand 2	B	65	74	anti-parallel
Strand 3	B	141	149	anti-parallel
Strand 4	B	157	164	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	203	first strand
Strand 2	B	390	394	parallel
Strand 3	B	420	426	parallel
Strand 4	B	88	92	parallel
Strand 5	B	440	442	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	335	first strand
Strand 2	B	342	347	anti-parallel
Strand 3	B	350	353	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	83	first strand
Strand 2	C	65	74	anti-parallel
Strand 3	C	141	149	anti-parallel
Strand 4	C	157	164	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	203	first strand
Strand 2	C	390	395	parallel
Strand 3	C	421	426	parallel
Strand 4	C	88	92	parallel
Strand 5	C	440	442	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	335	first strand
Strand 2	C	342	347	anti-parallel
Strand 3	C	350	353	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	83	first strand
Strand 2	D	65	74	anti-parallel
Strand 3	D	141	149	anti-parallel
Strand 4	D	157	164	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	203	first strand
Strand 2	D	390	395	parallel
Strand 3	D	421	426	parallel
Strand 4	D	88	92	parallel
Strand 5	D	440	442	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	337	first strand
Strand 2	D	340	347	anti-parallel
Strand 3	D	350	352	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	35	first strand
Strand 2	E	41	47	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	184	first strand
Strand 2	E	189	193	anti-parallel
Strand 3	E	91	95	anti-parallel
Strand 4	E	226	229	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	236	first strand
Strand 2	E	239	241	anti-parallel
Strand 3	E	247	248	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	35	first strand
Strand 2	F	41	47	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	185	first strand
Strand 2	F	188	193	anti-parallel
Strand 3	F	91	96	anti-parallel
Strand 4	F	226	229	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	236	first strand
Strand 2	F	239	241	anti-parallel
Strand 3	F	247	248	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	57	first strand
Strand 2	H	74	78	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	120	first strand
Strand 2	H	126	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L7P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L7P