Analysis of interatomic Contacts of Structural Units in PDB entry:
9L7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L7W entry

There are 4 chains in PDB entry 9L7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 54ASN 187
B
 PRO 53LEU 146
C
 ILE 65SER 183
D
 PRO 53LEU 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9L7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 92Right-handed alpha
Helix 2
AA2
A
141 155Right-handed alpha
Helix 3
AA3
A
163 171Right-handed alpha
Helix 4
AA4
A
180 186Right-handed alpha
Helix 5
AA5
B
61 65Right-handed 310
Helix 6
AA6
B
68 72Right-handed 310
Helix 7
AA7
B
108 117Right-handed alpha
Helix 8
AA8
B
135 146Right-handed alpha
Helix 9
AA9
C
66 94Right-handed alpha
Helix 10
AB1
C
141 155Right-handed alpha
Helix 11
AB2
C
163 171Right-handed alpha
Helix 12
AB3
D
61 65Right-handed 310
Helix 13
AB4
D
68 72Right-handed 310
Helix 14
AB5
D
108 118Right-handed alpha
Helix 15
AB6
D
135 146Right-handed alpha
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There are 8 sheets in PDB entry 9L7W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
108 114anti-parallel
Strand 3
A
133 135anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
108 114anti-parallel
Strand 3
A
121 124anti-parallel
Strand 4
A
159 161anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 78first strand
Strand 2
B
82 87anti-parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
100 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 78first strand
Strand 2
B
82 87anti-parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
125 126anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 104first strand
Strand 2
C
108 114anti-parallel
Strand 3
C
134 135anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 104first strand
Strand 2
C
108 114anti-parallel
Strand 3
C
121 124anti-parallel
Strand 4
C
159 161anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
74 77first strand
Strand 2
D
83 87anti-parallel
Strand 3
D
90 95anti-parallel
Strand 4
D
101 103anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
74 77first strand
Strand 2
D
83 87anti-parallel
Strand 3
D
90 95anti-parallel
Strand 4
D
125 126anti-parallel
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