Analysis of interatomic Contacts of Structural Units in PDB entry:
9L84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L84 entry

There are 5 chains in PDB entry 9L84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 15	LEU 394
B	GLN 1	ASN 340
G	ASN 5	ARG 62
N	GLN 1	SER 128
R	ALA 59	ALA 394

There are 26 helices in PDB entry 9L84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	40	Right-handed alpha
Helix 2	AA2	A	234	238	Right-handed 310
Helix 3	AA3	A	264	279	Right-handed alpha
Helix 4	AA4	A	293	301	Right-handed alpha
Helix 5	AA5	A	331	351	Right-handed alpha
Helix 6	AA6	A	370	391	Right-handed alpha
Helix 7	AA7	B	2	25	Right-handed alpha
Helix 8	AA8	B	29	35	Right-handed alpha
Helix 9	AA9	G	6	24	Right-handed alpha
Helix 10	AB1	G	29	44	Right-handed alpha
Helix 11	AB2	N	28	32	Right-handed 310
Helix 12	AB3	N	62	65	Right-handed 310
Helix 13	AB4	N	87	91	Right-handed 310
Helix 14	AB5	R	60	86	Right-handed alpha
Helix 15	AB6	R	93	111	Right-handed alpha
Helix 16	AB7	R	111	121	Right-handed alpha
Helix 17	AB8	R	127	162	Right-handed alpha
Helix 18	AB9	R	162	170	Right-handed alpha
Helix 19	AC1	R	171	191	Right-handed alpha
Helix 20	AC2	R	191	196	Right-handed alpha
Helix 21	AC3	R	203	212	Right-handed alpha
Helix 22	AC4	R	221	233	Right-handed alpha
Helix 23	AC5	R	233	254	Right-handed alpha
Helix 24	AC6	R	321	350	Right-handed alpha
Helix 25	AC7	R	355	378	Right-handed alpha
Helix 26	AC8	R	380	391	Right-handed alpha

There are 10 sheets in PDB entry 9L84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	362	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	81	83	anti-parallel
Strand 4	B	88	91	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	113	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	296	298	anti-parallel
Strand 4	B	304	306	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	6	first strand
Strand 2	N	19	24	anti-parallel
Strand 3	N	78	82	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L84

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L84