Analysis of interatomic Contacts of Structural Units in PDB entry:
9L85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L85 entry

There are 4 chains in PDB entry 9L85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 24	LEU 211
B	ASP 24	LEU 211
C	ASP 23	LEU 211
D	ASP 23	LEU 211

There are 32 helices in PDB entry 9L85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	76	Right-handed alpha
Helix 2	AA2	A	95	109	Right-handed alpha
Helix 3	AA3	A	123	134	Right-handed alpha
Helix 4	AA4	A	137	145	Right-handed alpha
Helix 5	AA5	A	151	159	Right-handed alpha
Helix 6	AA6	A	165	174	Right-handed alpha
Helix 7	AA7	A	182	198	Right-handed alpha
Helix 8	AA8	A	200	207	Right-handed alpha
Helix 9	AA9	B	68	76	Right-handed alpha
Helix 10	AB1	B	95	109	Right-handed alpha
Helix 11	AB2	B	123	135	Right-handed alpha
Helix 12	AB3	B	137	145	Right-handed alpha
Helix 13	AB4	B	151	159	Right-handed alpha
Helix 14	AB5	B	165	174	Right-handed alpha
Helix 15	AB6	B	182	198	Right-handed alpha
Helix 16	AB7	B	200	207	Right-handed alpha
Helix 17	AB8	C	68	76	Right-handed alpha
Helix 18	AB9	C	95	108	Right-handed alpha
Helix 19	AC1	C	123	135	Right-handed alpha
Helix 20	AC2	C	137	145	Right-handed alpha
Helix 21	AC3	C	151	159	Right-handed alpha
Helix 22	AC4	C	165	174	Right-handed alpha
Helix 23	AC5	C	182	198	Right-handed alpha
Helix 24	AC6	C	200	207	Right-handed alpha
Helix 25	AC7	D	68	76	Right-handed alpha
Helix 26	AC8	D	95	108	Right-handed alpha
Helix 27	AC9	D	123	135	Right-handed alpha
Helix 28	AD1	D	137	145	Right-handed alpha
Helix 29	AD2	D	151	159	Right-handed alpha
Helix 30	AD3	D	165	174	Right-handed alpha
Helix 31	AD4	D	182	198	Right-handed alpha
Helix 32	AD5	D	200	207	Right-handed alpha

There are 8 sheets in PDB entry 9L85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	60	first strand
Strand 2	A	45	52	anti-parallel
Strand 3	A	28	35	anti-parallel
Strand 4	A	114	117	parallel
Strand 5	A	148	150	parallel
Strand 6	A	208	209	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	83	86	anti-parallel
Strand 3	A	89	91	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	45	52	anti-parallel
Strand 3	B	28	35	anti-parallel
Strand 4	B	114	117	parallel
Strand 5	B	148	150	parallel
Strand 6	B	208	209	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	83	86	anti-parallel
Strand 3	B	90	91	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	55	61	parallel
Strand 3	C	45	52	anti-parallel
Strand 4	C	27	35	anti-parallel
Strand 5	C	113	117	parallel
Strand 6	C	148	150	parallel
Strand 7	C	208	209	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	83	86	anti-parallel
Strand 3	C	90	91	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	45	52	anti-parallel
Strand 3	D	27	35	anti-parallel
Strand 4	D	113	117	parallel
Strand 5	D	148	150	parallel
Strand 6	D	208	209	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	83	86	anti-parallel
Strand 3	D	89	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L85

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L85