Analysis of interatomic Contacts of Structural Units in PDB entry:
9L87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L87 entry

There are 3 chains in PDB entry 9L87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 24LEU 211
A
 GLU 25LEU 211
F
 T 2 C 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9L87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
68 76Right-handed alpha
Helix 2
AA2
B
95 109Right-handed alpha
Helix 3
AA3
B
123 135Right-handed alpha
Helix 4
AA4
B
137 145Right-handed alpha
Helix 5
AA5
B
151 159Right-handed alpha
Helix 6
AA6
B
165 175Right-handed alpha
Helix 7
AA7
B
182 198Right-handed alpha
Helix 8
AA8
B
200 207Right-handed alpha
Helix 9
AA9
A
68 76Right-handed alpha
Helix 10
AB1
A
95 109Right-handed alpha
Helix 11
AB2
A
123 135Right-handed alpha
Helix 12
AB3
A
137 145Right-handed alpha
Helix 13
AB4
A
151 159Right-handed alpha
Helix 14
AB5
A
165 175Right-handed alpha
Helix 15
AB6
A
184 198Right-handed alpha
Helix 16
AB7
A
200 207Right-handed alpha
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There are 4 sheets in PDB entry 9L87. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
55 61parallel
Strand 3
B
45 52anti-parallel
Strand 4
B
27 35anti-parallel
Strand 5
B
113 117parallel
Strand 6
B
148 150parallel
Strand 7
B
208 209anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
83 86anti-parallel
Strand 3
B
89 91anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
45 52anti-parallel
Strand 3
A
27 35anti-parallel
Strand 4
A
113 117parallel
Strand 5
A
148 150parallel
Strand 6
A
208 209anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
83 86anti-parallel
Strand 3
A
89 91anti-parallel
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