Analysis of interatomic Contacts of Structural Units in PDB entry:
9L8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L8L entry

There are 5 chains in PDB entry 9L8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	LEU 394
B	GLN 1	ASN 340
C	THR 6	LYS 355
G	ALA 10	ARG 62
R	GLU 30	CYS 341

There are 27 helices in PDB entry 9L8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	39	Right-handed alpha
Helix 2	AA2	A	231	236	Right-handed alpha
Helix 3	AA3	A	264	279	Right-handed alpha
Helix 4	AA4	A	280	283	Right-handed 310
Helix 5	AA5	A	293	304	Right-handed alpha
Helix 6	AA6	A	331	352	Right-handed alpha
Helix 7	AA7	A	370	391	Right-handed alpha
Helix 8	AA8	B	2	25	Right-handed alpha
Helix 9	AA9	C	98	109	Right-handed alpha
Helix 10	AB1	C	306	310	Right-handed 310
Helix 11	AB2	G	11	22	Right-handed alpha
Helix 12	AB3	G	23	25	Right-handed 310
Helix 13	AB4	G	29	44	Right-handed alpha
Helix 14	AB5	R	31	61	Right-handed alpha
Helix 15	AB6	R	62	65	Right-handed 310
Helix 16	AB7	R	66	86	Right-handed alpha
Helix 17	AB8	R	86	96	Right-handed alpha
Helix 18	AB9	R	102	137	Right-handed alpha
Helix 19	AC1	R	137	145	Right-handed alpha
Helix 20	AC2	R	146	172	Right-handed alpha
Helix 21	AC3	R	181	187	Right-handed alpha
Helix 22	AC4	R	196	208	Right-handed alpha
Helix 23	AC5	R	208	238	Right-handed alpha
Helix 24	AC6	R	271	299	Right-handed alpha
Helix 25	AC7	R	304	317	Right-handed alpha
Helix 26	AC8	R	317	327	Right-handed alpha
Helix 27	AC9	R	329	339	Right-handed alpha

There are 14 sheets in PDB entry 9L8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	244	249	parallel
Strand 5	A	287	292	parallel
Strand 6	A	359	360	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	123	125	anti-parallel
Strand 4	B	134	135	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	191	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	221	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	252	254	anti-parallel
Strand 4	B	259	262	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	10	first strand
Strand 2	C	19	22	anti-parallel
Strand 3	C	37	42	anti-parallel
Strand 4	C	112	117	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	169	171	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	85	first strand
Strand 2	C	53	58	anti-parallel
Strand 3	C	148	150	anti-parallel
Strand 4	C	163	164	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	288	290	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	214	217	anti-parallel
Strand 3	C	271	274	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	343	351	parallel
Strand 3	C	317	327	anti-parallel
Strand 4	C	232	241	anti-parallel
Strand 5	C	251	256	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L8L