Analysis of interatomic Contacts of Structural Units in PDB entry:
9L8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L8M entry

There are 3 chains in PDB entry 9L8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34PHE 776
C
 A 1 A 11
D
 U 1 U 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9L8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 68Right-handed 310
Helix 2
AA2
A
80 85Right-handed 310
Helix 3
AA3
A
127 131Right-handed 310
Helix 4
AA4
A
171 176Right-handed alpha
Helix 5
AA5
A
206 210Right-handed alpha
Helix 6
AA6
A
264 272Right-handed alpha
Helix 7
AA7
A
314 327Right-handed alpha
Helix 8
AA8
A
328 331Right-handed 310
Helix 9
AA9
A
332 342Right-handed alpha
Helix 10
AB1
A
429 433Right-handed alpha
Helix 11
AB2
A
434 437Right-handed 310
Helix 12
AB3
A
438 455Right-handed alpha
Helix 13
AB4
A
456 464Right-handed alpha
Helix 14
AB5
A
479 486Right-handed alpha
Helix 15
AB6
A
486 504Right-handed alpha
Helix 16
AB7
A
518 540Right-handed alpha
Helix 17
AB8
A
552 569Right-handed alpha
Helix 18
AB9
A
575 577Right-handed 310
Helix 19
AC1
A
578 596Right-handed alpha
Helix 20
AC2
A
601 624Right-handed alpha
Helix 21
AC3
A
631 653Right-handed alpha
Helix 22
AC4
A
659 684Right-handed alpha
Helix 23
AC5
A
689 713Right-handed alpha
Helix 24
AC6
A
720 725Right-handed alpha
Helix 25
AC7
A
738 762Right-handed alpha
Helix 26
AC8
A
763 766Right-handed 310
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There are 5 sheets in PDB entry 9L8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
56 63parallel
Strand 3
A
147 154anti-parallel
Strand 4
A
92 97anti-parallel
Strand 5
A
102 107anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
161 170anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
118 123anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
115 116anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 194first strand
Strand 2
A
300 309anti-parallel
Strand 3
A
213 220anti-parallel
Strand 4
A
258 263anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 205first strand
Strand 2
A
273 280anti-parallel
Strand 3
A
226 232anti-parallel
Strand 4
A
251 255anti-parallel
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