Analysis of interatomic Contacts of Structural Units in PDB entry:
9L8X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L8X entry

There are 2 chains in PDB entry 9L8X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 50ARG 507
A
 ALA 50ARG 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9L8X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
57 62Right-handed alpha
Helix 2
AA2
B
63 75Right-handed alpha
Helix 3
AA3
B
81 101Right-handed alpha
Helix 4
AA4
B
102 104Right-handed 310
Helix 5
AA5
B
118 122Right-handed 310
Helix 6
AA6
B
123 143Right-handed alpha
Helix 7
AA7
B
146 156Right-handed alpha
Helix 8
AA8
B
170 187Right-handed alpha
Helix 9
AA9
B
247 253Right-handed 310
Helix 10
AB1
B
260 265Right-handed 310
Helix 11
AB2
B
269 273Right-handed 310
Helix 12
AB3
B
276 293Right-handed alpha
Helix 13
AB4
B
295 307Right-handed alpha
Helix 14
AB5
B
307 314Right-handed alpha
Helix 15
AB6
B
322 352Right-handed alpha
Helix 16
AB7
B
355 364Right-handed alpha
Helix 17
AB8
B
402 420Right-handed alpha
Helix 18
AB9
B
454 468Right-handed alpha
Helix 19
AC1
B
472 499Right-handed alpha
Helix 20
AC2
A
57 62Right-handed alpha
Helix 21
AC3
A
63 75Right-handed alpha
Helix 22
AC4
A
81 101Right-handed alpha
Helix 23
AC5
A
102 104Right-handed 310
Helix 24
AC6
A
118 122Right-handed 310
Helix 25
AC7
A
123 143Right-handed alpha
Helix 26
AC8
A
146 156Right-handed alpha
Helix 27
AC9
A
170 187Right-handed alpha
Helix 28
AD1
A
196 200Right-handed 310
Helix 29
AD2
A
249 253Right-handed 310
Helix 30
AD3
A
260 264Right-handed 310
Helix 31
AD4
A
269 273Right-handed 310
Helix 32
AD5
A
276 293Right-handed alpha
Helix 33
AD6
A
295 307Right-handed alpha
Helix 34
AD7
A
307 314Right-handed alpha
Helix 35
AD8
A
315 319Right-handed 310
Helix 36
AD9
A
322 352Right-handed alpha
Helix 37
AE1
A
355 364Right-handed alpha
Helix 38
AE2
A
386 388Right-handed 310
Helix 39
AE3
A
402 420Right-handed alpha
Helix 40
AE4
A
454 468Right-handed alpha
Helix 41
AE5
A
472 500Right-handed alpha
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There are 5 sheets in PDB entry 9L8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
241 243anti-parallel
Strand 3
A
241 243anti-parallel
Strand 4
A
232 233anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 372first strand
Strand 2
B
379 384anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 430first strand
Strand 2
B
447 453anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 372first strand
Strand 2
A
379 384anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 430first strand
Strand 2
A
447 453anti-parallel
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