Analysis of interatomic Contacts of Structural Units in PDB entry:
9L8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L8Z entry

There are 6 chains in PDB entry 9L8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 49VAL 281
B
 TYR 1LEU 105
C
 GLN 1SER 125
D
 THR 49HIS 283
E
 TYR 1LEU 105
F
 GLN 1ALA 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9L8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 67Right-handed alpha
Helix 2
AA2
A
102 105Right-handed 310
Helix 3
AA3
A
106 112Right-handed alpha
Helix 4
AA4
A
196 205Right-handed alpha
Helix 5
AA5
C
105 109Right-handed 310
Helix 6
AA6
D
61 67Right-handed alpha
Helix 7
AA7
D
98 104Right-handed 310
Helix 8
AA8
D
105 113Right-handed alpha
Helix 9
AA9
D
196 204Right-handed alpha
Helix 10
AB1
F
63 66Right-handed 310
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There are 19 sheets in PDB entry 9L8Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
273 276anti-parallel
Strand 3
A
185 194anti-parallel
Strand 4
A
266 269anti-parallel
Strand 5
A
156 161anti-parallel
Strand 6
A
135 138anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
273 276anti-parallel
Strand 3
A
185 194anti-parallel
Strand 4
A
244 252anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
258 262anti-parallel
Strand 3
A
211 216anti-parallel
Strand 4
A
219 224anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
100 104parallel
Strand 3
B
82 90anti-parallel
Strand 4
B
32 36anti-parallel
Strand 5
B
43 46anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
100 104parallel
Strand 3
B
82 90anti-parallel
Strand 4
B
93 96anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 22first strand
Strand 2
B
68 73anti-parallel
Strand 3
B
60 65anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
17 25anti-parallel
Strand 3
C
79 85anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
119 123parallel
Strand 3
C
93 101anti-parallel
Strand 4
C
34 41anti-parallel
Strand 5
C
48 53anti-parallel
Strand 6
C
59 61anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
119 123parallel
Strand 3
C
93 101anti-parallel
Strand 4
C
111 115anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 83first strand
Strand 2
D
280 282parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 119first strand
Strand 2
D
273 276anti-parallel
Strand 3
D
185 194anti-parallel
Strand 4
D
266 269anti-parallel
Strand 5
D
156 160anti-parallel
Strand 6
D
136 137anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 119first strand
Strand 2
D
273 276anti-parallel
Strand 3
D
185 194anti-parallel
Strand 4
D
244 252anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 176first strand
Strand 2
D
258 262anti-parallel
Strand 3
D
211 216anti-parallel
Strand 4
D
219 224anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 11first strand
Strand 2
E
100 104parallel
Strand 3
E
82 90anti-parallel
Strand 4
E
31 36anti-parallel
Strand 5
E
43 46anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 11first strand
Strand 2
E
100 104parallel
Strand 3
E
82 90anti-parallel
Strand 4
E
93 96anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
17 22first strand
Strand 2
E
68 73anti-parallel
Strand 3
E
60 65anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 7first strand
Strand 2
F
16 25anti-parallel
Strand 3
F
79 87anti-parallel
Strand 4
F
73 74anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 12first strand
Strand 2
F
119 123parallel
Strand 3
F
93 101anti-parallel
Strand 4
F
34 40anti-parallel
Strand 5
F
48 53anti-parallel
Strand 6
F
60 61anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 12first strand
Strand 2
F
119 123parallel
Strand 3
F
93 101anti-parallel
Strand 4
F
111 115anti-parallel
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