Analysis of interatomic Contacts of Structural Units in PDB entry:
9L9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9L9D entry

There are 6 chains in PDB entry 9L9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 62SER 133
B
 SER 62SER 133
C
 SER 62SER 133
D
 SER 62SER 133
E
 SER 62SER 133
F
 SER 62SER 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9L9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 71Right-handed alpha
Helix 2
AA2
B
63 71Right-handed alpha
Helix 3
AA3
C
63 71Right-handed alpha
Helix 4
AA4
D
63 71Right-handed alpha
Helix 5
AA5
E
63 71Right-handed alpha
Helix 6
AA6
F
63 71Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9L9D.

There are 31 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 82first strand
Strand 2
A
91 97anti-parallel
Strand 3
A
102 107anti-parallel
Strand 4
A
116 122anti-parallel
Strand 5
B
126 133anti-parallel
Strand 6
B
77 82anti-parallel
Strand 7
B
87 97anti-parallel
Strand 8
B
102 107anti-parallel
Strand 9
B
117 122anti-parallel
Strand 10
C
126 132anti-parallel
Strand 11
C
77 82anti-parallel
Strand 12
C
91 97anti-parallel
Strand 13
C
102 107anti-parallel
Strand 14
C
117 122anti-parallel
Strand 15
D
126 132anti-parallel
Strand 16
D
77 82anti-parallel
Strand 17
D
87 97anti-parallel
Strand 18
D
102 107anti-parallel
Strand 19
D
116 122anti-parallel
Strand 20
E
126 133anti-parallel
Strand 21
E
77 82anti-parallel
Strand 22
E
87 97anti-parallel
Strand 23
E
102 107anti-parallel
Strand 24
E
116 122anti-parallel
Strand 25
F
126 133anti-parallel
Strand 26
F
77 82anti-parallel
Strand 27
F
87 97anti-parallel
Strand 28
F
102 107anti-parallel
Strand 29
F
116 122anti-parallel
Strand 30
A
126 133anti-parallel
Strand 31
A
77 82anti-parallel
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