Analysis of interatomic Contacts of Structural Units in PDB entry:
9L9P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9L9P entry

There are 5 chains in PDB entry 9L9P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
S	SER 13	THR 820
A	GLY 92	GLY 163
J	LEU 16	ARG 257
H	ALA 2	GLU 117
B	ASP 921	GLY 956

There are 24 helices in PDB entry 9L9P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	S	48	50	Right-handed 310
Helix 2	AA2	S	282	291	Right-handed alpha
Helix 3	AA3	S	306	318	Right-handed alpha
Helix 4	AA4	S	343	353	Right-handed alpha
Helix 5	AA5	S	385	389	Right-handed 310
Helix 6	AA6	S	396	400	Right-handed 310
Helix 7	AA7	S	425	430	Right-handed 310
Helix 8	AA8	S	445	462	Right-handed alpha
Helix 9	AA9	S	471	476	Right-handed 310
Helix 10	AB1	S	602	609	Right-handed alpha
Helix 11	AB2	S	767	771	Right-handed 310
Helix 12	AB3	A	101	108	Right-handed alpha
Helix 13	AB4	A	112	126	Right-handed alpha
Helix 14	AB5	A	135	141	Right-handed alpha
Helix 15	AB6	J	17	22	Right-handed alpha
Helix 16	AB7	J	55	66	Right-handed alpha
Helix 17	AB8	J	110	119	Right-handed alpha
Helix 18	AB9	J	120	123	Right-handed 310
Helix 19	AC1	J	135	137	Right-handed 310
Helix 20	AC2	J	191	196	Right-handed alpha
Helix 21	AC3	J	231	240	Right-handed alpha
Helix 22	AC4	H	58	69	Right-handed alpha
Helix 23	AC5	B	922	942	Right-handed alpha
Helix 24	AC6	B	945	955	Right-handed alpha

There are 22 sheets in PDB entry 9L9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	31	40	first strand
Strand 2	S	224	232	anti-parallel
Strand 3	S	72	76	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	57	58	first strand
Strand 2	S	52	54	anti-parallel
Strand 3	S	243	245	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	108	109	first strand
Strand 2	S	188	192	anti-parallel
Strand 3	S	142	147	anti-parallel
Strand 4	S	157	163	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	171	178	first strand
Strand 2	S	118	125	anti-parallel
Strand 3	S	207	208	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	171	178	first strand
Strand 2	S	118	125	anti-parallel
Strand 3	S	212	214	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	130	131	first strand
Strand 2	S	137	138	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	252	255	first strand
Strand 2	S	273	276	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	320	321	first strand
Strand 2	S	329	330	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	358	360	first strand
Strand 2	S	367	369	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	378	380	first strand
Strand 2	S	482	485	parallel
Strand 3	S	574	583	anti-parallel
Strand 4	S	592	598	anti-parallel
Strand 5	S	466	470	anti-parallel
Strand 6	S	391	392	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	420	423	first strand
Strand 2	S	403	406	anti-parallel
Strand 3	S	435	438	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	534	537	first strand
Strand 2	S	523	526	anti-parallel
Strand 3	S	564	567	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	632	635	first strand
Strand 2	S	644	653	anti-parallel
Strand 3	S	638	641	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	632	635	first strand
Strand 2	S	644	653	anti-parallel
Strand 3	S	683	687	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	674	679	first strand
Strand 2	S	662	667	anti-parallel
Strand 3	S	692	700	anti-parallel
Strand 4	S	714	718	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	730	734	first strand
Strand 2	S	743	747	anti-parallel
Strand 3	S	784	785	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	772	775	first strand
Strand 2	S	755	762	anti-parallel
Strand 3	S	796	803	anti-parallel
Strand 4	S	815	816	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	47	first strand
Strand 2	J	29	37	anti-parallel
Strand 3	J	126	133	anti-parallel
Strand 4	J	150	161	anti-parallel
Strand 5	J	165	171	anti-parallel
Strand 6	J	102	106	anti-parallel
Strand 7	J	85	87	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	212	213	first strand
Strand 2	J	219	220	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	32	first strand
Strand 2	H	35	40	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	56	first strand
Strand 2	H	103	111	anti-parallel
Strand 3	H	85	88	anti-parallel
Strand 4	H	74	75	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	56	first strand
Strand 2	H	103	111	anti-parallel
Strand 3	H	94	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9L9P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9L9P