Analysis of interatomic Contacts of Structural Units in PDB entry:
9LAG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LAG entry

There are 5 chains in PDB entry 9LAG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	GLY 316
E	VAL 5	GLY 316
B	VAL 5	GLY 316
C	VAL 5	GLY 316
D	VAL 5	GLY 316

There are 35 helices in PDB entry 9LAG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	61	Right-handed 310
Helix 2	AA2	A	118	121	Right-handed 310
Helix 3	AA3	A	196	214	Right-handed alpha
Helix 4	AA4	A	215	218	Right-handed 310
Helix 5	AA5	A	220	243	Right-handed alpha
Helix 6	AA6	A	253	282	Right-handed alpha
Helix 7	AA7	A	284	315	Right-handed alpha
Helix 8	AA8	E	57	61	Right-handed 310
Helix 9	AA9	E	118	121	Right-handed 310
Helix 10	AB1	E	196	214	Right-handed alpha
Helix 11	AB2	E	215	218	Right-handed 310
Helix 12	AB3	E	220	243	Right-handed alpha
Helix 13	AB4	E	253	282	Right-handed alpha
Helix 14	AB5	E	284	315	Right-handed alpha
Helix 15	AB6	B	57	61	Right-handed 310
Helix 16	AB7	B	118	121	Right-handed 310
Helix 17	AB8	B	196	214	Right-handed alpha
Helix 18	AB9	B	215	218	Right-handed 310
Helix 19	AC1	B	220	243	Right-handed alpha
Helix 20	AC2	B	253	282	Right-handed alpha
Helix 21	AC3	B	284	315	Right-handed alpha
Helix 22	AC4	C	57	61	Right-handed 310
Helix 23	AC5	C	118	121	Right-handed 310
Helix 24	AC6	C	196	214	Right-handed alpha
Helix 25	AC7	C	215	218	Right-handed 310
Helix 26	AC8	C	220	243	Right-handed alpha
Helix 27	AC9	C	253	282	Right-handed alpha
Helix 28	AD1	C	284	315	Right-handed alpha
Helix 29	AD2	D	57	61	Right-handed 310
Helix 30	AD3	D	118	121	Right-handed 310
Helix 31	AD4	D	196	214	Right-handed alpha
Helix 32	AD5	D	215	218	Right-handed 310
Helix 33	AD6	D	220	243	Right-handed alpha
Helix 34	AD7	D	253	282	Right-handed alpha
Helix 35	AD8	D	284	315	Right-handed alpha

There are 15 sheets in PDB entry 9LAG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	88	94	anti-parallel
Strand 3	A	100	111	anti-parallel
Strand 4	A	36	47	anti-parallel
Strand 5	A	16	21	anti-parallel
Strand 6	A	140	144	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	88	94	anti-parallel
Strand 3	A	100	111	anti-parallel
Strand 4	A	36	47	anti-parallel
Strand 5	A	23	31	anti-parallel
Strand 6	A	150	151	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	183	192	anti-parallel
Strand 4	A	160	170	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	88	94	anti-parallel
Strand 3	E	100	111	anti-parallel
Strand 4	E	36	47	anti-parallel
Strand 5	E	16	21	anti-parallel
Strand 6	E	140	144	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	88	94	anti-parallel
Strand 3	E	100	111	anti-parallel
Strand 4	E	36	47	anti-parallel
Strand 5	E	23	31	anti-parallel
Strand 6	E	150	151	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	78	first strand
Strand 2	E	123	132	anti-parallel
Strand 3	E	183	192	anti-parallel
Strand 4	E	160	170	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	88	94	anti-parallel
Strand 3	B	100	111	anti-parallel
Strand 4	B	36	47	anti-parallel
Strand 5	B	16	21	anti-parallel
Strand 6	B	140	144	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	88	94	anti-parallel
Strand 3	B	100	111	anti-parallel
Strand 4	B	36	47	anti-parallel
Strand 5	B	23	31	anti-parallel
Strand 6	B	150	151	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	123	132	anti-parallel
Strand 3	B	183	192	anti-parallel
Strand 4	B	160	170	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	88	94	anti-parallel
Strand 3	C	100	111	anti-parallel
Strand 4	C	36	47	anti-parallel
Strand 5	C	16	21	anti-parallel
Strand 6	C	140	144	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	88	94	anti-parallel
Strand 3	C	100	111	anti-parallel
Strand 4	C	36	47	anti-parallel
Strand 5	C	23	31	anti-parallel
Strand 6	C	150	151	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	123	132	anti-parallel
Strand 3	C	183	192	anti-parallel
Strand 4	C	160	170	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	88	94	anti-parallel
Strand 3	D	100	111	anti-parallel
Strand 4	D	36	47	anti-parallel
Strand 5	D	16	21	anti-parallel
Strand 6	D	140	144	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	88	94	anti-parallel
Strand 3	D	100	111	anti-parallel
Strand 4	D	36	47	anti-parallel
Strand 5	D	23	31	anti-parallel
Strand 6	D	150	151	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	123	132	anti-parallel
Strand 3	D	183	192	anti-parallel
Strand 4	D	160	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LAG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LAG