Analysis of interatomic Contacts of Structural Units in PDB entry:
9LBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LBF entry

There are 2 chains in PDB entry 9LBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 86SER 522
B
 GLY 93SER 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9LBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 109Right-handed alpha
Helix 2
AA2
A
112 119Right-handed alpha
Helix 3
AA3
A
119 133Right-handed alpha
Helix 4
AA4
A
228 236Right-handed alpha
Helix 5
AA5
A
244 248Right-handed alpha
Helix 6
AA6
A
287 299Right-handed alpha
Helix 7
AA7
A
330 338Right-handed alpha
Helix 8
AA8
A
341 362Right-handed alpha
Helix 9
AA9
A
370 372Right-handed 310
Helix 10
AB1
A
411 417Right-handed alpha
Helix 11
AB2
A
423 439Right-handed alpha
Helix 12
AB3
A
447 459Right-handed alpha
Helix 13
AB4
A
465 469Right-handed 310
Helix 14
AB5
A
470 481Right-handed alpha
Helix 15
AB6
A
490 495Right-handed alpha
Helix 16
AB7
A
496 503Right-handed 310
Helix 17
AB8
A
505 508Right-handed 310
Helix 18
AB9
A
509 520Right-handed alpha
Helix 19
AC1
B
102 109Right-handed alpha
Helix 20
AC2
B
114 118Right-handed 310
Helix 21
AC3
B
120 132Right-handed alpha
Helix 22
AC4
B
228 236Right-handed alpha
Helix 23
AC5
B
244 248Right-handed alpha
Helix 24
AC6
B
287 301Right-handed alpha
Helix 25
AC7
B
330 338Right-handed alpha
Helix 26
AC8
B
341 362Right-handed alpha
Helix 27
AC9
B
370 372Right-handed 310
Helix 28
AD1
B
387 391Right-handed 310
Helix 29
AD2
B
411 416Right-handed alpha
Helix 30
AD3
B
423 439Right-handed alpha
Helix 31
AD4
B
447 459Right-handed alpha
Helix 32
AD5
B
470 481Right-handed alpha
Helix 33
AD6
B
490 495Right-handed alpha
Helix 34
AD7
B
496 503Right-handed 310
Helix 35
AD8
B
505 508Right-handed 310
Helix 36
AD9
B
509 521Right-handed alpha
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There are 5 sheets in PDB entry 9LBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
94 96anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 256first strand
Strand 2
A
262 268anti-parallel
Strand 3
A
274 281anti-parallel
Strand 4
A
318 324anti-parallel
Strand 5
A
309 315anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
382 384anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 256first strand
Strand 2
B
262 268anti-parallel
Strand 3
B
273 281anti-parallel
Strand 4
B
318 324anti-parallel
Strand 5
B
309 315anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 376first strand
Strand 2
B
382 384anti-parallel
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