Analysis of interatomic Contacts of Structural Units in PDB entry:
9LBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LBM entry

There are 7 chains in PDB entry 9LBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ALA 107	ALA 392
G	ALA 107	ALA 392
B	ALA 107	ALA 392
A	ALA 107	ALA 392
C	ALA 107	ALA 392
D	ALA 107	ALA 392
E	ALA 107	ALA 392

There are 39 helices in PDB entry 9LBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	119	123	Right-handed 310
Helix 2	AA2	F	209	232	Right-handed alpha
Helix 3	AA3	F	260	275	Right-handed alpha
Helix 4	AA4	F	285	294	Right-handed alpha
Helix 5	AA5	F	379	381	Right-handed 310
Helix 6	AA6	G	209	232	Right-handed alpha
Helix 7	AA7	G	260	275	Right-handed alpha
Helix 8	AA8	G	285	294	Right-handed alpha
Helix 9	AA9	G	335	339	Right-handed alpha
Helix 10	AB1	B	119	123	Right-handed 310
Helix 11	AB2	B	210	232	Right-handed alpha
Helix 12	AB3	B	242	247	Right-handed alpha
Helix 13	AB4	B	260	275	Right-handed alpha
Helix 14	AB5	B	285	294	Right-handed alpha
Helix 15	AB6	A	140	145	Right-handed alpha
Helix 16	AB7	A	202	207	Right-handed alpha
Helix 17	AB8	A	208	232	Right-handed alpha
Helix 18	AB9	A	243	247	Right-handed 310
Helix 19	AC1	A	260	274	Right-handed alpha
Helix 20	AC2	A	285	294	Right-handed alpha
Helix 21	AC3	A	358	363	Right-handed alpha
Helix 22	AC4	A	379	381	Right-handed 310
Helix 23	AC5	C	210	232	Right-handed alpha
Helix 24	AC6	C	243	247	Right-handed 310
Helix 25	AC7	C	260	275	Right-handed alpha
Helix 26	AC8	C	285	293	Right-handed alpha
Helix 27	AC9	C	379	381	Right-handed 310
Helix 28	AD1	D	209	232	Right-handed alpha
Helix 29	AD2	D	243	247	Right-handed 310
Helix 30	AD3	D	260	275	Right-handed alpha
Helix 31	AD4	D	285	294	Right-handed alpha
Helix 32	AD5	D	335	339	Right-handed alpha
Helix 33	AD6	D	379	381	Right-handed 310
Helix 34	AD7	E	140	145	Right-handed alpha
Helix 35	AD8	E	209	232	Right-handed alpha
Helix 36	AD9	E	242	247	Right-handed alpha
Helix 37	AE1	E	260	275	Right-handed alpha
Helix 38	AE2	E	285	294	Right-handed alpha
Helix 39	AE3	E	379	381	Right-handed 310

There are 29 sheets in PDB entry 9LBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	132	first strand
Strand 2	G	155	163	parallel
Strand 3	G	181	187	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	149	first strand
Strand 2	F	340	344	parallel
Strand 3	F	373	377	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	187	first strand
Strand 2	F	155	159	anti-parallel
Strand 3	E	126	127	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	169	first strand
Strand 2	E	193	200	anti-parallel
Strand 3	E	364	370	anti-parallel
Strand 4	E	349	353	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	349	353	first strand
Strand 2	F	364	370	anti-parallel
Strand 3	F	192	200	anti-parallel
Strand 4	G	168	170	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	315	first strand
Strand 2	F	318	322	anti-parallel
Strand 3	F	281	284	parallel
Strand 4	F	330	334	anti-parallel
Strand 5	F	383	387	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	132	first strand
Strand 2	B	154	159	parallel
Strand 3	B	184	189	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	149	first strand
Strand 2	G	340	344	parallel
Strand 3	G	373	377	anti-parallel
Strand 4	G	190	191	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	200	first strand
Strand 2	G	364	370	anti-parallel
Strand 3	G	350	353	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	314	315	first strand
Strand 2	G	318	322	anti-parallel
Strand 3	G	281	284	parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	383	387	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	132	first strand
Strand 2	C	155	163	parallel
Strand 3	C	181	187	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	149	first strand
Strand 2	B	340	344	parallel
Strand 3	B	373	377	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	364	370	anti-parallel
Strand 3	B	192	200	anti-parallel
Strand 4	C	168	170	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	318	322	parallel
Strand 3	B	314	315	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	334	first strand
Strand 2	B	383	387	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	340	344	parallel
Strand 3	A	364	377	anti-parallel
Strand 4	A	191	200	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	149	first strand
Strand 2	A	340	344	parallel
Strand 3	A	364	377	anti-parallel
Strand 4	A	350	353	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	163	first strand
Strand 2	A	181	189	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	322	first strand
Strand 2	A	282	284	parallel
Strand 3	A	330	334	anti-parallel
Strand 4	A	383	387	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	132	first strand
Strand 2	D	154	163	parallel
Strand 3	D	181	189	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	149	first strand
Strand 2	C	340	344	parallel
Strand 3	C	373	377	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	364	370	anti-parallel
Strand 3	C	193	200	anti-parallel
Strand 4	D	168	169	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	315	first strand
Strand 2	C	318	322	anti-parallel
Strand 3	C	281	284	parallel
Strand 4	C	330	334	anti-parallel
Strand 5	C	383	387	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	127	first strand
Strand 2	E	154	159	parallel
Strand 3	E	184	191	anti-parallel
Strand 4	E	373	377	anti-parallel
Strand 5	E	340	344	anti-parallel
Strand 6	E	146	149	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	149	first strand
Strand 2	D	340	344	parallel
Strand 3	D	373	377	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	353	first strand
Strand 2	D	364	370	anti-parallel
Strand 3	D	193	200	anti-parallel
Strand 4	E	168	169	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	315	first strand
Strand 2	D	318	322	anti-parallel
Strand 3	D	281	284	parallel
Strand 4	D	330	334	anti-parallel
Strand 5	D	383	387	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	164	first strand
Strand 2	E	180	181	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	249	first strand
Strand 2	E	383	387	parallel
Strand 3	E	330	334	anti-parallel
Strand 4	E	281	284	anti-parallel
Strand 5	E	318	322	parallel
Strand 6	E	314	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LBM