Analysis of interatomic Contacts of Structural Units in PDB entry:
9LBN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LBN entry

There are 8 chains in PDB entry 9LBN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLY 40	THR 410
I	ALA 2	VAL 111
J	PRO 2	GLN 124
K	THR 2	THR 118
L	ALA 2	ALA 212
M	ALA 2	ALA 212
h	GLY 40	THR 410
i	ALA 2	VAL 111

There are 53 helices in PDB entry 9LBN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	52	58	Right-handed alpha
Helix 2	AA2	H	60	76	Right-handed alpha
Helix 3	AA3	H	94	102	Right-handed alpha
Helix 4	AA4	H	109	124	Right-handed alpha
Helix 5	AA5	H	145	147	Right-handed 310
Helix 6	AA6	H	174	176	Right-handed 310
Helix 7	AA7	H	193	198	Right-handed alpha
Helix 8	AA8	H	198	219	Right-handed alpha
Helix 9	AA9	H	233	250	Right-handed alpha
Helix 10	AB1	H	268	274	Right-handed alpha
Helix 11	AB2	H	274	289	Right-handed alpha
Helix 12	AB3	H	309	337	Right-handed alpha
Helix 13	AB4	H	339	344	Right-handed alpha
Helix 14	AB5	H	353	357	Right-handed 310
Helix 15	AB6	H	359	373	Right-handed alpha
Helix 16	AB7	H	377	385	Right-handed alpha
Helix 17	AB8	H	391	396	Right-handed 310
Helix 18	AB9	H	407	409	Right-handed 310
Helix 19	AC1	I	4	13	Right-handed alpha
Helix 20	AC2	I	18	29	Right-handed alpha
Helix 21	AC3	I	29	41	Right-handed alpha
Helix 22	AC4	I	48	58	Right-handed alpha
Helix 23	AC5	I	69	86	Right-handed alpha
Helix 24	AC6	I	96	103	Right-handed alpha
Helix 25	AC7	I	104	106	Right-handed 310
Helix 26	AC8	J	71	77	Right-handed alpha
Helix 27	AC9	K	3	16	Right-handed alpha
Helix 28	AD1	K	67	84	Right-handed alpha
Helix 29	AD2	L	147	160	Right-handed alpha
Helix 30	AD3	M	147	160	Right-handed alpha
Helix 31	AD4	h	52	58	Right-handed alpha
Helix 32	AD5	h	59	75	Right-handed alpha
Helix 33	AD6	h	94	102	Right-handed alpha
Helix 34	AD7	h	109	124	Right-handed alpha
Helix 35	AD8	h	145	147	Right-handed 310
Helix 36	AD9	h	174	176	Right-handed 310
Helix 37	AE1	h	193	198	Right-handed alpha
Helix 38	AE2	h	198	219	Right-handed alpha
Helix 39	AE3	h	233	251	Right-handed alpha
Helix 40	AE4	h	268	274	Right-handed alpha
Helix 41	AE5	h	274	289	Right-handed alpha
Helix 42	AE6	h	309	338	Right-handed alpha
Helix 43	AE7	h	341	344	Right-handed 310
Helix 44	AE8	h	359	373	Right-handed alpha
Helix 45	AE9	h	377	385	Right-handed alpha
Helix 46	AF1	h	391	396	Right-handed 310
Helix 47	AF2	i	4	13	Right-handed alpha
Helix 48	AF3	i	18	28	Right-handed alpha
Helix 49	AF4	i	29	42	Right-handed alpha
Helix 50	AF5	i	48	58	Right-handed alpha
Helix 51	AF6	i	69	86	Right-handed alpha
Helix 52	AF7	i	96	103	Right-handed alpha
Helix 53	AF8	i	104	106	Right-handed 310

There are 26 sheets in PDB entry 9LBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	44	first strand
Strand 2	H	50	51	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	90	first strand
Strand 2	H	80	84	anti-parallel
Strand 3	H	346	348	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	144	first strand
Strand 2	H	127	134	anti-parallel
Strand 3	H	178	181	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	153	first strand
Strand 2	H	159	164	anti-parallel
Strand 3	H	170	173	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	224	228	first strand
Strand 2	H	260	264	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	403	405	first strand
Strand 2	h	398	400	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	46	first strand
Strand 2	I	66	67	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	38	42	anti-parallel
Strand 3	J	65	69	anti-parallel
Strand 4	J	113	117	anti-parallel
Strand 5	J	103	105	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	14	15	first strand
Strand 2	J	84	88	anti-parallel
Strand 3	J	95	99	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	54	first strand
Strand 2	J	58	62	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	21	first strand
Strand 2	K	34	38	parallel
Strand 3	K	54	63	anti-parallel
Strand 4	K	109	116	anti-parallel
Strand 5	K	88	91	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	46	first strand
Strand 2	K	50	51	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	97	99	first strand
Strand 2	K	104	106	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	95	96	first strand
Strand 2	L	10	14	anti-parallel
Strand 3	L	163	168	anti-parallel
Strand 4	L	177	181	anti-parallel
Strand 5	L	201	203	anti-parallel
Strand 6	L	136	137	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	16	21	first strand
Strand 2	L	88	91	anti-parallel
Strand 3	L	44	47	anti-parallel
Strand 4	L	58	63	anti-parallel
Strand 5	L	67	69	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	110	115	first strand
Strand 2	L	126	132	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	140	142	first strand
Strand 2	L	196	198	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	95	96	first strand
Strand 2	M	11	14	anti-parallel
Strand 3	M	164	168	anti-parallel
Strand 4	M	174	176	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	21	22	first strand
Strand 2	M	87	90	anti-parallel
Strand 3	M	44	47	anti-parallel
Strand 4	M	58	63	anti-parallel
Strand 5	M	67	68	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	110	112	first strand
Strand 2	M	129	132	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	179	183	first strand
Strand 2	M	199	203	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	87	90	first strand
Strand 2	h	78	84	anti-parallel
Strand 3	h	346	350	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	137	143	first strand
Strand 2	h	126	134	anti-parallel
Strand 3	h	178	182	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	149	153	first strand
Strand 2	h	159	164	anti-parallel
Strand 3	h	170	173	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	224	228	first strand
Strand 2	h	260	264	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	45	46	first strand
Strand 2	i	66	67	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LBN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LBN