Analysis of interatomic Contacts of Structural Units in PDB entry:
9LBQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LBQ entry

There are 16 chains in PDB entry 9LBQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 32	ASN 371
B	MET 1	THR 749
C	A 17	G 81
D	C 1	T 75
E	ALA 32	ASN 371
F	MET 1	THR 749
G	A 17	G 81
H	C 1	T 75
I	ALA 32	ASN 371
J	MET 1	THR 749
K	A 17	G 81
L	C 1	T 75
M	ALA 32	ASN 371
N	MET 1	THR 749
O	A 17	G 81
P	C 1	T 75

There are172 helices in PDB entry 9LBQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	71	Right-handed alpha
Helix 2	AA2	A	72	75	Right-handed 310
Helix 3	AA3	A	89	95	Right-handed alpha
Helix 4	AA4	A	96	98	Right-handed 310
Helix 5	AA5	A	116	124	Right-handed alpha
Helix 6	AA6	A	139	146	Right-handed alpha
Helix 7	AA7	A	168	192	Right-handed alpha
Helix 8	AA8	A	215	227	Right-handed alpha
Helix 9	AA9	A	271	283	Right-handed alpha
Helix 10	AB1	A	286	295	Right-handed alpha
Helix 11	AB2	A	310	344	Right-handed alpha
Helix 12	AB3	A	347	371	Right-handed alpha
Helix 13	AB4	B	32	51	Right-handed alpha
Helix 14	AB5	B	79	84	Right-handed alpha
Helix 15	AB6	B	90	107	Right-handed alpha
Helix 16	AB7	B	143	154	Right-handed alpha
Helix 17	AB8	B	162	164	Right-handed 310
Helix 18	AB9	B	259	276	Right-handed alpha
Helix 19	AC1	B	292	310	Right-handed alpha
Helix 20	AC2	B	335	346	Right-handed alpha
Helix 21	AC3	B	374	380	Right-handed alpha
Helix 22	AC4	B	382	388	Right-handed alpha
Helix 23	AC5	B	399	407	Right-handed alpha
Helix 24	AC6	B	408	413	Right-handed alpha
Helix 25	AC7	B	417	421	Right-handed 310
Helix 26	AC8	B	427	434	Right-handed alpha
Helix 27	AC9	B	435	440	Right-handed 310
Helix 28	AD1	B	467	477	Right-handed alpha
Helix 29	AD2	B	485	500	Right-handed alpha
Helix 30	AD3	B	519	532	Right-handed alpha
Helix 31	AD4	B	542	548	Right-handed alpha
Helix 32	AD5	B	552	568	Right-handed alpha
Helix 33	AD6	B	574	586	Right-handed alpha
Helix 34	AD7	B	591	600	Right-handed alpha
Helix 35	AD8	B	611	636	Right-handed alpha
Helix 36	AD9	B	639	650	Right-handed alpha
Helix 37	AE1	B	659	667	Right-handed alpha
Helix 38	AE2	B	669	683	Right-handed alpha
Helix 39	AE3	B	687	691	Right-handed 310
Helix 40	AE4	B	696	713	Right-handed alpha
Helix 41	AE5	B	715	727	Right-handed alpha
Helix 42	AE6	B	727	744	Right-handed alpha
Helix 43	AE7	B	744	749	Right-handed alpha
Helix 44	AE8	E	58	71	Right-handed alpha
Helix 45	AE9	E	72	75	Right-handed 310
Helix 46	AF1	E	89	95	Right-handed alpha
Helix 47	AF2	E	96	98	Right-handed 310
Helix 48	AF3	E	116	124	Right-handed alpha
Helix 49	AF4	E	139	146	Right-handed alpha
Helix 50	AF5	E	168	192	Right-handed alpha
Helix 51	AF6	E	215	227	Right-handed alpha
Helix 52	AF7	E	271	283	Right-handed alpha
Helix 53	AF8	E	286	295	Right-handed alpha
Helix 54	AF9	E	310	344	Right-handed alpha
Helix 55	AG1	E	347	371	Right-handed alpha
Helix 56	AG2	F	32	51	Right-handed alpha
Helix 57	AG3	F	79	84	Right-handed alpha
Helix 58	AG4	F	90	107	Right-handed alpha
Helix 59	AG5	F	143	154	Right-handed alpha
Helix 60	AG6	F	162	164	Right-handed 310
Helix 61	AG7	F	259	276	Right-handed alpha
Helix 62	AG8	F	292	310	Right-handed alpha
Helix 63	AG9	F	335	346	Right-handed alpha
Helix 64	AH1	F	374	380	Right-handed alpha
Helix 65	AH2	F	382	388	Right-handed alpha
Helix 66	AH3	F	399	407	Right-handed alpha
Helix 67	AH4	F	408	413	Right-handed alpha
Helix 68	AH5	F	417	421	Right-handed 310
Helix 69	AH6	F	427	434	Right-handed alpha
Helix 70	AH7	F	435	440	Right-handed 310
Helix 71	AH8	F	467	477	Right-handed alpha
Helix 72	AH9	F	485	500	Right-handed alpha
Helix 73	AI1	F	519	532	Right-handed alpha
Helix 74	AI2	F	542	548	Right-handed alpha
Helix 75	AI3	F	552	568	Right-handed alpha
Helix 76	AI4	F	574	586	Right-handed alpha
Helix 77	AI5	F	591	600	Right-handed alpha
Helix 78	AI6	F	611	636	Right-handed alpha
Helix 79	AI7	F	639	650	Right-handed alpha
Helix 80	AI8	F	659	667	Right-handed alpha
Helix 81	AI9	F	669	683	Right-handed alpha
Helix 82	AJ1	F	687	691	Right-handed 310
Helix 83	AJ2	F	696	713	Right-handed alpha
Helix 84	AJ3	F	715	727	Right-handed alpha
Helix 85	AJ4	F	727	744	Right-handed alpha
Helix 86	AJ5	F	744	749	Right-handed alpha
Helix 87	AJ6	I	58	71	Right-handed alpha
Helix 88	AJ7	I	72	75	Right-handed 310
Helix 89	AJ8	I	89	95	Right-handed alpha
Helix 90	AJ9	I	96	98	Right-handed 310
Helix 91	AK1	I	116	124	Right-handed alpha
Helix 92	AK2	I	139	146	Right-handed alpha
Helix 93	AK3	I	168	192	Right-handed alpha
Helix 94	AK4	I	215	227	Right-handed alpha
Helix 95	AK5	I	271	283	Right-handed alpha
Helix 96	AK6	I	286	295	Right-handed alpha
Helix 97	AK7	I	310	344	Right-handed alpha
Helix 98	AK8	I	347	371	Right-handed alpha
Helix 99	AK9	J	32	51	Right-handed alpha
Helix 100	AL1	J	79	84	Right-handed alpha
Helix 101	AL2	J	90	107	Right-handed alpha
Helix 102	AL3	J	143	154	Right-handed alpha
Helix 103	AL4	J	162	164	Right-handed 310
Helix 104	AL5	J	259	276	Right-handed alpha
Helix 105	AL6	J	292	310	Right-handed alpha
Helix 106	AL7	J	335	346	Right-handed alpha
Helix 107	AL8	J	374	380	Right-handed alpha
Helix 108	AL9	J	382	388	Right-handed alpha
Helix 109	AM1	J	399	407	Right-handed alpha
Helix 110	AM2	J	408	413	Right-handed alpha
Helix 111	AM3	J	417	421	Right-handed 310
Helix 112	AM4	J	427	434	Right-handed alpha
Helix 113	AM5	J	435	440	Right-handed 310
Helix 114	AM6	J	467	477	Right-handed alpha
Helix 115	AM7	J	485	500	Right-handed alpha
Helix 116	AM8	J	519	532	Right-handed alpha
Helix 117	AM9	J	542	548	Right-handed alpha
Helix 118	AN1	J	552	568	Right-handed alpha
Helix 119	AN2	J	574	586	Right-handed alpha
Helix 120	AN3	J	591	600	Right-handed alpha
Helix 121	AN4	J	611	636	Right-handed alpha
Helix 122	AN5	J	639	650	Right-handed alpha
Helix 123	AN6	J	659	667	Right-handed alpha
Helix 124	AN7	J	669	683	Right-handed alpha
Helix 125	AN8	J	687	691	Right-handed 310
Helix 126	AN9	J	696	713	Right-handed alpha
Helix 127	AO1	J	715	727	Right-handed alpha
Helix 128	AO2	J	727	744	Right-handed alpha
Helix 129	AO3	J	744	749	Right-handed alpha
Helix 130	AO4	M	58	71	Right-handed alpha
Helix 131	AO5	M	72	75	Right-handed 310
Helix 132	AO6	M	89	95	Right-handed alpha
Helix 133	AO7	M	96	98	Right-handed 310
Helix 134	AO8	M	116	124	Right-handed alpha
Helix 135	AO9	M	139	146	Right-handed alpha
Helix 136	AP1	M	168	192	Right-handed alpha
Helix 137	AP2	M	215	227	Right-handed alpha
Helix 138	AP3	M	271	283	Right-handed alpha
Helix 139	AP4	M	286	295	Right-handed alpha
Helix 140	AP5	M	310	344	Right-handed alpha
Helix 141	AP6	M	347	371	Right-handed alpha
Helix 142	AP7	N	32	51	Right-handed alpha
Helix 143	AP8	N	79	84	Right-handed alpha
Helix 144	AP9	N	90	107	Right-handed alpha
Helix 145	AQ1	N	143	154	Right-handed alpha
Helix 146	AQ2	N	162	164	Right-handed 310
Helix 147	AQ3	N	259	276	Right-handed alpha
Helix 148	AQ4	N	292	310	Right-handed alpha
Helix 149	AQ5	N	335	346	Right-handed alpha
Helix 150	AQ6	N	374	380	Right-handed alpha
Helix 151	AQ7	N	382	388	Right-handed alpha
Helix 152	AQ8	N	399	407	Right-handed alpha
Helix 153	AQ9	N	408	413	Right-handed alpha
Helix 154	AR1	N	417	421	Right-handed 310
Helix 155	AR2	N	427	434	Right-handed alpha
Helix 156	AR3	N	435	440	Right-handed 310
Helix 157	AR4	N	467	477	Right-handed alpha
Helix 158	AR5	N	485	500	Right-handed alpha
Helix 159	AR6	N	519	532	Right-handed alpha
Helix 160	AR7	N	542	548	Right-handed alpha
Helix 161	AR8	N	552	568	Right-handed alpha
Helix 162	AR9	N	574	586	Right-handed alpha
Helix 163	AS1	N	591	600	Right-handed alpha
Helix 164	AS2	N	611	636	Right-handed alpha
Helix 165	AS3	N	639	650	Right-handed alpha
Helix 166	AS4	N	659	667	Right-handed alpha
Helix 167	AS5	N	669	683	Right-handed alpha
Helix 168	AS6	N	687	691	Right-handed 310
Helix 169	AS7	N	696	713	Right-handed alpha
Helix 170	AS8	N	715	727	Right-handed alpha
Helix 171	AS9	N	727	744	Right-handed alpha
Helix 172	AT1	N	744	749	Right-handed alpha

There are 32 sheets in PDB entry 9LBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	49	54	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	198	first strand
Strand 2	A	201	205	anti-parallel
Strand 3	A	103	107	anti-parallel
Strand 4	A	239	241	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	160	161	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	250	253	anti-parallel
Strand 3	A	263	266	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	20	first strand
Strand 2	B	3	11	anti-parallel
Strand 3	B	68	75	anti-parallel
Strand 4	B	124	131	anti-parallel
Strand 5	B	137	139	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	281	285	parallel
Strand 3	B	328	332	parallel
Strand 4	B	25	30	parallel
Strand 5	B	350	357	parallel
Strand 6	B	363	368	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	425	first strand
Strand 2	B	394	397	parallel
Strand 3	B	445	450	parallel
Strand 4	B	536	539	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	457	first strand
Strand 2	B	464	466	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	46	first strand
Strand 2	E	49	54	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	198	first strand
Strand 2	E	201	205	anti-parallel
Strand 3	E	103	107	anti-parallel
Strand 4	E	239	241	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	151	first strand
Strand 2	E	160	161	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	247	first strand
Strand 2	E	250	253	anti-parallel
Strand 3	E	263	266	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	20	first strand
Strand 2	F	3	11	anti-parallel
Strand 3	F	68	75	anti-parallel
Strand 4	F	124	131	anti-parallel
Strand 5	F	137	139	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	160	first strand
Strand 2	F	281	285	parallel
Strand 3	F	328	332	parallel
Strand 4	F	25	30	parallel
Strand 5	F	350	357	parallel
Strand 6	F	363	368	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	422	425	first strand
Strand 2	F	394	397	parallel
Strand 3	F	445	450	parallel
Strand 4	F	536	539	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	455	457	first strand
Strand 2	F	464	466	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	46	first strand
Strand 2	I	49	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	194	198	first strand
Strand 2	I	201	205	anti-parallel
Strand 3	I	103	107	anti-parallel
Strand 4	I	239	241	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	150	151	first strand
Strand 2	I	160	161	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	244	247	first strand
Strand 2	I	250	253	anti-parallel
Strand 3	I	263	266	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	14	20	first strand
Strand 2	J	3	11	anti-parallel
Strand 3	J	68	75	anti-parallel
Strand 4	J	124	131	anti-parallel
Strand 5	J	137	139	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	156	160	first strand
Strand 2	J	281	285	parallel
Strand 3	J	328	332	parallel
Strand 4	J	25	30	parallel
Strand 5	J	350	357	parallel
Strand 6	J	363	368	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	422	425	first strand
Strand 2	J	394	397	parallel
Strand 3	J	445	450	parallel
Strand 4	J	536	539	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	455	457	first strand
Strand 2	J	464	466	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	41	46	first strand
Strand 2	M	49	54	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	194	198	first strand
Strand 2	M	201	205	anti-parallel
Strand 3	M	103	107	anti-parallel
Strand 4	M	239	241	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	150	151	first strand
Strand 2	M	160	161	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	244	247	first strand
Strand 2	M	250	253	anti-parallel
Strand 3	M	263	266	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	14	20	first strand
Strand 2	N	3	11	anti-parallel
Strand 3	N	68	75	anti-parallel
Strand 4	N	124	131	anti-parallel
Strand 5	N	137	139	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	156	160	first strand
Strand 2	N	281	285	parallel
Strand 3	N	328	332	parallel
Strand 4	N	25	30	parallel
Strand 5	N	350	357	parallel
Strand 6	N	363	368	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	422	425	first strand
Strand 2	N	394	397	parallel
Strand 3	N	445	450	parallel
Strand 4	N	536	539	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	455	457	first strand
Strand 2	N	464	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LBQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LBQ