Analysis of interatomic Contacts of Structural Units in PDB entry:
9LBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LBV entry

There are 2 chains in PDB entry 9LBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3LYS 438
B
 ALA 3ALA 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9LBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 25Right-handed alpha
Helix 2
AA2
A
31 50Right-handed alpha
Helix 3
AA3
A
50 63Right-handed alpha
Helix 4
AA4
A
68 71Right-handed 310
Helix 5
AA5
A
75 86Right-handed alpha
Helix 6
AA6
A
87 109Right-handed alpha
Helix 7
AA7
A
144 159Right-handed alpha
Helix 8
AA8
A
169 173Right-handed 310
Helix 9
AA9
A
175 186Right-handed alpha
Helix 10
AB1
A
194 205Right-handed alpha
Helix 11
AB2
A
220 231Right-handed alpha
Helix 12
AB3
A
254 267Right-handed alpha
Helix 13
AB4
A
280 295Right-handed alpha
Helix 14
AB5
A
296 298Right-handed 310
Helix 15
AB6
A
300 312Right-handed alpha
Helix 16
AB7
A
319 331Right-handed alpha
Helix 17
AB8
A
341 346Right-handed alpha
Helix 18
AB9
A
347 349Right-handed 310
Helix 19
AC1
A
362 367Right-handed 310
Helix 20
AC2
A
389 392Right-handed 310
Helix 21
AC3
A
403 421Right-handed alpha
Helix 22
AC4
A
423 432Right-handed alpha
Helix 23
AC5
B
16 27Right-handed alpha
Helix 24
AC6
B
31 63Right-handed alpha
Helix 25
AC7
B
68 71Right-handed 310
Helix 26
AC8
B
75 86Right-handed alpha
Helix 27
AC9
B
87 109Right-handed alpha
Helix 28
AD1
B
144 159Right-handed alpha
Helix 29
AD2
B
169 173Right-handed 310
Helix 30
AD3
B
175 186Right-handed alpha
Helix 31
AD4
B
194 205Right-handed alpha
Helix 32
AD5
B
220 230Right-handed alpha
Helix 33
AD6
B
254 267Right-handed alpha
Helix 34
AD7
B
280 295Right-handed alpha
Helix 35
AD8
B
296 298Right-handed 310
Helix 36
AD9
B
300 312Right-handed alpha
Helix 37
AE1
B
319 331Right-handed alpha
Helix 38
AE2
B
341 346Right-handed alpha
Helix 39
AE3
B
347 349Right-handed 310
Helix 40
AE4
B
362 364Right-handed 310
Helix 41
AE5
B
365 370Right-handed alpha
Helix 42
AE6
B
378 383Right-handed alpha
Helix 43
AE7
B
388 392Right-handed 310
Helix 44
AE8
B
403 421Right-handed alpha
Helix 45
AE9
B
423 432Right-handed alpha
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There are 4 sheets in PDB entry 9LBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
313 316parallel
Strand 3
A
273 278parallel
Strand 4
A
244 249parallel
Strand 5
A
334 338parallel
Strand 6
A
354 357parallel
Strand 7
B
394 401parallel
Strand 8
B
122 129anti-parallel
Strand 9
B
113 116anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
189 191anti-parallel
Strand 3
A
162 166parallel
Strand 4
A
132 136parallel
Strand 5
A
214 216parallel
Strand 6
A
235 236parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
122 129anti-parallel
Strand 3
A
394 401anti-parallel
Strand 4
B
354 357parallel
Strand 5
B
334 338parallel
Strand 6
B
244 249parallel
Strand 7
B
273 278parallel
Strand 8
B
313 316parallel
Strand 9
B
9 11parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
189 191anti-parallel
Strand 3
B
162 166parallel
Strand 4
B
132 136parallel
Strand 5
B
214 216parallel
Strand 6
B
235 236parallel
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