Analysis of interatomic Contacts of Structural Units in PDB entry:
9LC2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LC2 entry

There are 6 chains in PDB entry 9LC2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11LYS 173
B
 GLY 11LEU 175
C
 A 1 C 18
D
 G 1 T 18
E
 A 1 C 18
F
 G 1 T 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9LC2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
21 23Right-handed 310
Helix 3
AA3
A
24 25Right-handed 310
Helix 4
AA4
A
26 45Right-handed alpha
Helix 5
AA5
A
49 62Right-handed alpha
Helix 6
AA6
A
64 82Right-handed alpha
Helix 7
AA7
A
84 86Right-handed 310
Helix 8
AA8
A
87 96Right-handed alpha
Helix 9
AA9
A
129 137Right-handed alpha
Helix 10
AB1
A
146 148Right-handed 310
Helix 11
AB2
A
164 166Right-handed 310
Helix 12
AB3
B
12 20Right-handed alpha
Helix 13
AB4
B
21 23Right-handed 310
Helix 14
AB5
B
24 25Right-handed 310
Helix 15
AB6
B
26 45Right-handed alpha
Helix 16
AB7
B
49 62Right-handed alpha
Helix 17
AB8
B
64 82Right-handed alpha
Helix 18
AB9
B
84 86Right-handed 310
Helix 19
AC1
B
87 96Right-handed alpha
Helix 20
AC2
B
129 137Right-handed alpha
Helix 21
AC3
B
146 148Right-handed 310
Helix 22
AC4
B
164 166Right-handed 310
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There are 4 sheets in PDB entry 9LC2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
127 128anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
168 170anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
127 128anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
168 170anti-parallel
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