Analysis of interatomic Contacts of Structural Units in PDB entry:
9LCK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LCK entry

There are 5 chains in PDB entry 9LCK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 201	LYS 716
B	MET 1	PRO 668
C	LYS 61	GLY 103
D	A 3	U 11
E	A 1	U 18

There are 45 helices in PDB entry 9LCK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	209	218	Right-handed alpha
Helix 2	AA2	A	225	235	Right-handed alpha
Helix 3	AA3	A	240	249	Right-handed alpha
Helix 4	AA4	A	302	314	Right-handed alpha
Helix 5	AA5	A	330	343	Right-handed alpha
Helix 6	AA6	A	344	348	Right-handed 310
Helix 7	AA7	A	363	370	Right-handed alpha
Helix 8	AA8	A	405	416	Right-handed alpha
Helix 9	AA9	A	433	451	Right-handed alpha
Helix 10	AB1	A	453	476	Right-handed alpha
Helix 11	AB2	A	529	538	Right-handed 310
Helix 12	AB3	A	572	577	Right-handed alpha
Helix 13	AB4	A	578	581	Right-handed 310
Helix 14	AB5	A	582	604	Right-handed alpha
Helix 15	AB6	A	606	614	Right-handed alpha
Helix 16	AB7	A	632	650	Right-handed alpha
Helix 17	AB8	A	652	674	Right-handed alpha
Helix 18	AB9	A	682	693	Right-handed alpha
Helix 19	AC1	A	697	715	Right-handed alpha
Helix 20	AC2	B	5	11	Right-handed 310
Helix 21	AC3	B	17	22	Right-handed 310
Helix 22	AC4	B	35	49	Right-handed alpha
Helix 23	AC5	B	84	99	Right-handed alpha
Helix 24	AC6	B	101	116	Right-handed alpha
Helix 25	AC7	B	118	124	Right-handed 310
Helix 26	AC8	B	138	153	Right-handed alpha
Helix 27	AC9	B	157	161	Right-handed 310
Helix 28	AD1	B	162	176	Right-handed alpha
Helix 29	AD2	B	213	222	Right-handed alpha
Helix 30	AD3	B	245	265	Right-handed alpha
Helix 31	AD4	B	275	291	Right-handed alpha
Helix 32	AD5	B	314	326	Right-handed alpha
Helix 33	AD6	B	330	346	Right-handed alpha
Helix 34	AD7	B	382	393	Right-handed alpha
Helix 35	AD8	B	413	426	Right-handed alpha
Helix 36	AD9	B	428	433	Right-handed alpha
Helix 37	AE1	B	455	472	Right-handed alpha
Helix 38	AE2	B	518	537	Right-handed alpha
Helix 39	AE3	B	540	560	Right-handed alpha
Helix 40	AE4	B	572	583	Right-handed alpha
Helix 41	AE5	B	590	594	Right-handed 310
Helix 42	AE6	B	607	612	Right-handed alpha
Helix 43	AE7	B	617	625	Right-handed alpha
Helix 44	AE8	C	61	66	Right-handed 310
Helix 45	AE9	C	93	102	Right-handed alpha

There are 10 sheets in PDB entry 9LCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	679	680	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	300	303	anti-parallel
Strand 5	B	447	451	anti-parallel
Strand 6	B	438	442	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	480	491	anti-parallel
Strand 4	A	358	360	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	324	first strand
Strand 2	A	541	551	anti-parallel
Strand 3	A	556	571	anti-parallel
Strand 4	A	517	526	anti-parallel
Strand 5	A	496	506	anti-parallel
Strand 6	A	480	491	anti-parallel
Strand 7	A	420	421	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	B	364	369	parallel
Strand 3	B	354	359	anti-parallel
Strand 4	A	390	392	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	631	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	136	137	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	208	212	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	495	498	anti-parallel
Strand 3	B	501	504	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LCK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LCK