Analysis of interatomic Contacts of Structural Units in PDB entry:
9LCP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LCP entry

There are 2 chains in PDB entry 9LCP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2789	ARG 4120
B	ASP 8	ASP 68

There are 57 helices in PDB entry 9LCP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2793	2802	Right-handed alpha
Helix 2	AA2	A	2823	2838	Right-handed alpha
Helix 3	AA3	A	2839	2841	Right-handed 310
Helix 4	AA4	A	2872	2875	Right-handed 310
Helix 5	AA5	A	2876	2886	Right-handed alpha
Helix 6	AA6	A	2916	2918	Right-handed 310
Helix 7	AA7	A	2919	2939	Right-handed alpha
Helix 8	AA8	A	2951	2963	Right-handed alpha
Helix 9	AA9	A	2965	2980	Right-handed alpha
Helix 10	AB1	A	2996	2998	Right-handed 310
Helix 11	AB2	A	3008	3018	Right-handed alpha
Helix 12	AB3	A	3019	3022	Right-handed 310
Helix 13	AB4	A	3026	3042	Right-handed alpha
Helix 14	AB5	A	3086	3101	Right-handed alpha
Helix 15	AB6	A	3102	3104	Right-handed 310
Helix 16	AB7	A	3105	3114	Right-handed alpha
Helix 17	AB8	A	3116	3125	Right-handed alpha
Helix 18	AB9	A	3192	3215	Right-handed alpha
Helix 19	AC1	A	3223	3227	Right-handed 310
Helix 20	AC2	A	3233	3238	Right-handed alpha
Helix 21	AC3	A	3254	3267	Right-handed alpha
Helix 22	AC4	A	3286	3302	Right-handed alpha
Helix 23	AC5	A	3339	3356	Right-handed alpha
Helix 24	AC6	A	3391	3409	Right-handed alpha
Helix 25	AC7	A	3420	3431	Right-handed alpha
Helix 26	AC8	A	3432	3445	Right-handed alpha
Helix 27	AC9	A	3462	3466	Right-handed 310
Helix 28	AD1	A	3480	3493	Right-handed alpha
Helix 29	AD2	A	3497	3515	Right-handed alpha
Helix 30	AD3	A	3532	3538	Right-handed 310
Helix 31	AD4	A	3560	3576	Right-handed alpha
Helix 32	AD5	A	3577	3579	Right-handed 310
Helix 33	AD6	A	3582	3589	Right-handed alpha
Helix 34	AD7	A	3614	3619	Right-handed alpha
Helix 35	AD8	A	3658	3679	Right-handed alpha
Helix 36	AD9	A	3683	3687	Right-handed 310
Helix 37	AE1	A	3691	3700	Right-handed alpha
Helix 38	AE2	A	3701	3704	Right-handed 310
Helix 39	AE3	A	3710	3713	Right-handed 310
Helix 40	AE4	A	3714	3726	Right-handed alpha
Helix 41	AE5	A	3740	3758	Right-handed alpha
Helix 42	AE6	A	3773	3786	Right-handed alpha
Helix 43	AE7	A	3798	3810	Right-handed alpha
Helix 44	AE8	A	3817	3831	Right-handed alpha
Helix 45	AE9	A	3842	3846	Right-handed alpha
Helix 46	AF1	A	3884	3898	Right-handed alpha
Helix 47	AF2	A	3915	3927	Right-handed alpha
Helix 48	AF3	A	3935	3940	Right-handed alpha
Helix 49	AF4	A	3941	3952	Right-handed alpha
Helix 50	AF5	A	3960	3968	Right-handed alpha
Helix 51	AF6	A	3989	4000	Right-handed alpha
Helix 52	AF7	A	4011	4015	Right-handed 310
Helix 53	AF8	A	4025	4030	Right-handed 310
Helix 54	AF9	A	4050	4054	Right-handed 310
Helix 55	AG1	A	4080	4087	Right-handed alpha
Helix 56	AG2	B	44	55	Right-handed alpha
Helix 57	AG3	B	60	67	Right-handed alpha

There are 13 sheets in PDB entry 9LCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2865	2869	first strand
Strand 2	A	2895	2901	parallel
Strand 3	A	2907	2914	anti-parallel
Strand 4	A	2811	2818	anti-parallel
Strand 5	A	3148	3150	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2843	2847	first strand
Strand 2	A	2852	2856	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3000	3006	first strand
Strand 2	A	3179	3187	anti-parallel
Strand 3	A	3169	3176	anti-parallel
Strand 4	A	3131	3138	parallel
Strand 5	A	3048	3054	parallel
Strand 6	A	3075	3081	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3247	3252	first strand
Strand 2	A	3316	3321	anti-parallel
Strand 3	A	3306	3311	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3327	3332	first strand
Strand 2	A	3365	3371	parallel
Strand 3	A	3376	3384	anti-parallel
Strand 4	A	3274	3282	anti-parallel
Strand 5	A	3624	3625	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3472	3478	first strand
Strand 2	A	3647	3653	anti-parallel
Strand 3	A	3636	3641	anti-parallel
Strand 4	A	3601	3605	parallel
Strand 5	A	3518	3525	parallel
Strand 6	A	3544	3551	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3789	3792	first strand
Strand 2	A	3765	3769	parallel
Strand 3	A	3813	3816	parallel
Strand 4	A	3838	3841	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3864	3870	first strand
Strand 2	A	3878	3883	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3905	3908	first strand
Strand 2	A	3930	3933	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3956	3959	first strand
Strand 2	A	3980	3983	parallel
Strand 3	A	4004	4009	parallel
Strand 4	A	4019	4022	anti-parallel
Strand 5	A	4037	4038	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4042	4047	first strand
Strand 2	A	4063	4070	anti-parallel
Strand 3	A	4099	4109	anti-parallel
Strand 4	A	4088	4090	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4042	4047	first strand
Strand 2	A	4063	4070	anti-parallel
Strand 3	A	4099	4109	anti-parallel
Strand 4	A	4115	4119	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	26	first strand
Strand 2	B	11	16	anti-parallel
Strand 3	B	36	43	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LCP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LCP